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There's a new bakta version and new databases.
Need to update the version in the conda envs and also the download links for the databases.
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Hello.
I followed the Usage section in the README.
Specifically, I cloned this repository and rewrote the following four lines in `config/config.yml` to point at my local hg38 files.
https://gith…
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Observed locally.
A Snakemake demo workflow and the corresponding batch pod finish successfully, but when creating the final report, there is an active fetching of style assets from CDN going on, …
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I think `Snakemake` has a way to directly track code so we don't need to define Jupyter notebooks as input.
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Dear snakemake team,
I using existing conda env, and get an issue:
rule Diting:
input:
reads=expand('/home/lbhuang/Moore/Diting/reads/{IDS}_{READ}.fastq.gz', IDS=file_ids.id, READ=file_…
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Hi there,
I tried to use MicroExonator to analyze my dataset. The program finished successfully with -np. However, Errors as shown below occurred when I used it for my data analysis with "snakemake…
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Hi Mitchell!
We've tried to run FIRE on targeted seq data, and pipeline is failing with "polars.exceptions.NoDataError: empty CSV", since fiber-locations-shuffled.bed.gz is created empty.
The bed …
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Hi, I just tried to load a VCF file where info fields' names contained points:
```
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=
##INFO=…
Hoeze updated
3 years ago
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## items for metadata
- includes real data or no
- parameters
- parameters that are fixed versus not
- for parameters with ranges, how are they sampled across support
- model scale
…
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Hi Vincent,
We like to test if neuronal activation in mice (biqucucline treatment) caused the D-compartmentalization. We liked your analysis of annotating the D compartment and followed your method a…