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Hi,
I'm testing `tigmint` following your instruction. So far I executed the following commands:
```
bwa index $ASSEMBLY.fasta
bwa mem -t$THREADS -C $ASSEMBLY.fasta $R1 $R2 | samtools sort -@8 …
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# command
```
tbx team teamfolder mirror -from ACCOUNT_ALIAS_A -to ACCOUNT_ALIAS_B
tbx team teamfolder mirror -from ACCOUNT_ALIAS_A -to ACCOUNT_ALIAS_B -name TEAM_FOLDER_NAME
```
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Runtime failure of Advection_F compiled with debugging:
```
klaus@asterix:/home/aladin/klaus/projects/amrex/Tutorials/Amr/Advection_F/Exec/SingleVortex$ OMP_NUM_THREADS=1 ./main2d.gnu.DEBUG.MPI3.OMP…
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I have a project which depends on rust-htslib. On a centos 7 box where I just installed from rustup (rustc 1.36), I see the following in the cargo build log:
```
...
Compiling bio-types v0.5.1…
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Exome bed file can contain close to 300k records. `std::set` of this size will slow the import stage to a crawl.
Local profiling shows that most of the time (~86% in this case) is spent in iterati…
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Hi,
bin/doremiapi fails. Error:
```
Traceback (most recent call last):
File "bin/doremiapi", line 15, in
import dcitools.devices.doremi.snmp as doremi_snmp
File "/usr/local/lib/pyth…
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Hi, I encountered the following error while trying to install STAR on Debian GNU/Linux 8.11. Not sure. Noting the first line "Depend.list" No such file or directory. Does that mean there is something …
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Hello Gabriel,
Here is the compilation output I get when I tried to compile on Mac Mojave v. 10.14.4
Peter
uhtred:glactools-master bgppermp$ make
rm -rf bamtools/
git clone --recursive https://…
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- TBX to use test version initially
- Nathan to update with specific tasks needed after further research
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Hi, I just updated the bcbio installation to the latest development version. Then I test the RNA-seq pipeline using the following yaml file:
> upload:
> dir: upload
> details:
> - analysis: …