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atks
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vt
A tool set for short variant discovery in genetic sequence data.
http://genome.sph.umich.edu/wiki/vt
MIT License
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3
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Uniq does not take into account SVLEN (Symbolic variants)
#123
davmlaw
opened
4 months ago
0
Can't install vt on cluster
#122
boutrys
opened
6 months ago
0
Error installing vt in conda environment
#121
jcasadogp
opened
11 months ago
0
New release
#120
serge2016
opened
1 year ago
1
Does or can Vt provide a 'compose_blocksub' feature?
#119
rhdolin
opened
2 years ago
1
peek list classfication for every variants
#118
Zhuxitong
opened
2 years ago
0
error while loading shared libraries: libcrypto.so.3: cannot open shared object file: No such file or directory
#117
AJFeng
opened
2 years ago
1
Version needs to be bumped
#116
davmlaw
closed
3 years ago
1
VT rminfo get's killed
#115
violetbrina
opened
3 years ago
0
"decompose_blocksub -a" position indel issue
#114
m-blanes
opened
3 years ago
0
Error with installation
#113
sigven
opened
3 years ago
11
Patches from Debian
#112
frikiluser
opened
4 years ago
5
vt decompose -s not decomposing TOPMED info field
#111
roryk
closed
4 years ago
2
"bcf_synced_reader.h:108 operator()" error wen using vt sort
#110
estolle
opened
4 years ago
0
add toupper
#109
MelanieBroutin
closed
4 years ago
0
make error, /tmp/ccB26cYJ.s: Assembler messages
#108
winni-liu
opened
4 years ago
0
"make" cmd fails due to: /usr/bin/ld: cannot find -lcurl
#107
attilagk
opened
4 years ago
0
cannot find -lcurl and -lcrypto
#106
rfakoya
closed
4 years ago
1
Potential bug in LogTool::prob2pl
#105
dwuab
opened
4 years ago
0
Fix for REF vs FASTA case mismatch issue #46
#104
travc
opened
4 years ago
0
lib/Rmath/bessel_i.c error
#103
YT-er
opened
4 years ago
1
"bcf_fmt_array" error
#102
ycl6
opened
4 years ago
5
Add option to keep close MNVs in decompose_blocksub
#101
jaudoux
closed
4 years ago
8
vt peek enhancement
#100
darked89
opened
5 years ago
1
bioconda install broken error while loading shared libraries: libcrypto.so.1.0.0:
#99
huguesfontenelle
closed
4 years ago
2
Consecutive SNPs
#98
nurmians
closed
4 years ago
1
annotate_db_rsid command not found
#97
marcora
closed
5 years ago
1
decompose_blocksub cannot handle REF properly
#96
Fohlen
opened
5 years ago
0
Unable to parse the VCF 4.2 specification example VCF
#95
13am
closed
5 years ago
0
vt estimate converts QUAL to '-nan' for multi-allelic sites
#94
oleraj
opened
5 years ago
0
compilation error: "/usr/bin/ld: cannot find -lcurl"
#93
yjx1217
closed
6 years ago
1
Way to list all available tools in vt from command line?
#92
tseemann
closed
4 years ago
5
brew install Brewsci/bio/vt instead of brew install Homebrew/science/vt
#91
sbridel
opened
6 years ago
1
-lcrypto issue abort make
#90
sbridel
closed
4 years ago
3
Can it call tetraploid variants?
#89
afzm
opened
6 years ago
3
smart decomposition does not export AD for multiallelic variant
#88
wangshu84
closed
6 years ago
8
Decomposition of multi-allellic loci lose Number=G type INFO fields
#87
mmoisse
closed
6 years ago
5
option missing to configure installation directory from source
#86
ghost
closed
6 years ago
4
Make a new release?
#85
tseemann
opened
6 years ago
6
vt cannot retrieve sequences from my reference sequence file
#84
alrafaykhan
opened
6 years ago
4
Mac install, Homebrew failing, make failing on lzma.h
#83
MartinPersida
opened
6 years ago
5
vt partition error with GATK vcf
#82
MarisaMiller
closed
4 years ago
2
Vt norm Failed to open fasta file
#81
WesDe
closed
4 years ago
3
vt sort does not output expected file if -m full
#80
tdelhomme
closed
6 years ago
8
VCF is truncated if input not sorted
#79
tdelhomme
closed
6 years ago
4
Revert "Fixed a compilation issue on macOs High Sierra"
#78
atks
closed
6 years ago
0
Fixed a compilation issue on macOs High Sierra
#77
plaeremans
closed
6 years ago
2
Make error in CentOS 6.9
#76
maryawood
closed
7 years ago
2
protected (some) complex variants from left-trimming in normalize
#75
selkovjr
opened
7 years ago
1
Erroneous left-trimming of complex alleles
#74
selkovjr
opened
7 years ago
3
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