atks vt issues - Githubissues

atks / vt

A tool set for short variant discovery in genetic sequence data.

http://genome.sph.umich.edu/wiki/vt

MIT License

190 stars 3 forks source link

issues

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Uniq does not take into account SVLEN (Symbolic variants)

#123 davmlaw opened 4 months ago
0
Can't install vt on cluster

#122 boutrys opened 6 months ago
0
Error installing vt in conda environment

#121 jcasadogp opened 11 months ago
0
New release

#120 serge2016 opened 1 year ago
1
Does or can Vt provide a 'compose_blocksub' feature?

#119 rhdolin opened 2 years ago
1
peek list classfication for every variants

#118 Zhuxitong opened 2 years ago
0
error while loading shared libraries: libcrypto.so.3: cannot open shared object file: No such file or directory

#117 AJFeng opened 2 years ago
1
Version needs to be bumped

#116 davmlaw closed 3 years ago
1
VT rminfo get's killed

#115 violetbrina opened 3 years ago
0
"decompose_blocksub -a" position indel issue

#114 m-blanes opened 3 years ago
0
Error with installation

#113 sigven opened 3 years ago
11
Patches from Debian

#112 frikiluser opened 4 years ago
5
vt decompose -s not decomposing TOPMED info field

#111 roryk closed 4 years ago
2
"bcf_synced_reader.h:108 operator()" error wen using vt sort

#110 estolle opened 4 years ago
0
add toupper

#109 MelanieBroutin closed 4 years ago
0
make error, /tmp/ccB26cYJ.s: Assembler messages

#108 winni-liu opened 4 years ago
0
"make" cmd fails due to: /usr/bin/ld: cannot find -lcurl

#107 attilagk opened 4 years ago
0
cannot find -lcurl and -lcrypto

#106 rfakoya closed 4 years ago
1
Potential bug in LogTool::prob2pl

#105 dwuab opened 4 years ago
0
Fix for REF vs FASTA case mismatch issue #46

#104 travc opened 4 years ago
0
lib/Rmath/bessel_i.c error

#103 YT-er opened 4 years ago
1
"bcf_fmt_array" error

#102 ycl6 opened 4 years ago
5
Add option to keep close MNVs in decompose_blocksub

#101 jaudoux closed 4 years ago
8
vt peek enhancement

#100 darked89 opened 5 years ago
1
bioconda install broken error while loading shared libraries: libcrypto.so.1.0.0:

#99 huguesfontenelle closed 4 years ago
2
Consecutive SNPs

#98 nurmians closed 4 years ago
1
annotate_db_rsid command not found

#97 marcora closed 5 years ago
1
decompose_blocksub cannot handle REF properly

#96 Fohlen opened 5 years ago
0
Unable to parse the VCF 4.2 specification example VCF

#95 13am closed 5 years ago
0
vt estimate converts QUAL to '-nan' for multi-allelic sites

#94 oleraj opened 5 years ago
0
compilation error: "/usr/bin/ld: cannot find -lcurl"

#93 yjx1217 closed 6 years ago
1
Way to list all available tools in vt from command line?

#92 tseemann closed 4 years ago
5
brew install Brewsci/bio/vt instead of brew install Homebrew/science/vt

#91 sbridel opened 6 years ago
1
-lcrypto issue abort make

#90 sbridel closed 4 years ago
3
Can it call tetraploid variants?

#89 afzm opened 6 years ago
3
smart decomposition does not export AD for multiallelic variant

#88 wangshu84 closed 6 years ago
8
Decomposition of multi-allellic loci lose Number=G type INFO fields

#87 mmoisse closed 6 years ago
5
option missing to configure installation directory from source

#86 ghost closed 6 years ago
4
Make a new release?

#85 tseemann opened 6 years ago
6
vt cannot retrieve sequences from my reference sequence file

#84 alrafaykhan opened 6 years ago
4
Mac install, Homebrew failing, make failing on lzma.h

#83 MartinPersida opened 6 years ago
5
vt partition error with GATK vcf

#82 MarisaMiller closed 4 years ago
2
Vt norm Failed to open fasta file

#81 WesDe closed 4 years ago
3
vt sort does not output expected file if -m full

#80 tdelhomme closed 6 years ago
8
VCF is truncated if input not sorted

#79 tdelhomme closed 6 years ago
4
Revert "Fixed a compilation issue on macOs High Sierra"

#78 atks closed 6 years ago
0
Fixed a compilation issue on macOs High Sierra

#77 plaeremans closed 6 years ago
2
Make error in CentOS 6.9

#76 maryawood closed 7 years ago
2
protected (some) complex variants from left-trimming in normalize

#75 selkovjr opened 7 years ago
1
Erroneous left-trimming of complex alleles

#74 selkovjr opened 7 years ago
3