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Hello. I'm studying protein S-acylation and would very much like to use the MSstatsPTM package on our TMT dataset. However our fragpipe output would require a fair amount preprocessing to be compatibl…
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Jira processor needs to know how to handle an erratum. For that there should be a configuration stored in a single or multiple YAML files.
Below is the proposed format but the actual implementation…
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## Describe the bug
Building the RPMs locally on Fedora 37 creates a dependency on python 3.11 for bluechi-python. However, the tmt tests run on CentoOS Stream 9 containers which run python 3.9. As…
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- Describe the issue or question:
Hi Fengchao,
The title says it all. While trying to analyze 3 phospho TMT runs (11 plex) on an hpc system, I'm receiving the following error :
ERROR - Not al…
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### Description
Following up on https://github.com/packit/packit-service/pull/2182 . This is especially for the `trigger: commit` case.
Using https://github.com/containers/aardvark-dns/commit/fe…
lsm5 updated
8 months ago
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Dear Fragpipe team,
thank you for the amazing job and support to FragPipe and the proteomic community.
I recently started to use FragPipe for TMT data extraction and I am having issue when I am …
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Hi all,
I just found out that our tutorial is under development and I don't know why, it was already published as being ready quite some time ago:
https://training.galaxyproject.org/training-mater…
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Hello,
I am trying to run MSstatsPTM with my DDA phosphoproteomics data. I've seen the related ticket #45 .I've used FragPipe v20.0 and I have the MSstats.csv output. My MSstatsPTM version is v2.5.1.…
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### What version of Go are you using (`go version`)?
$ go version
1.19.2
### Does this issue reproduce with the latest release?
Has not been tested.
### What operating system and …
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When dumping the Adjacency Sid data, the ospf vty code expects it be 8 bytes of data but the value is 7.
```
Opaque-Type 8 (Extended Link Opaque LSA)
Opaque-ID 0x1
Opaque-Inf…