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Hi,
I am trying to run mustache on a publicly available dataset, but I keep getting an error:
python3 ~/code/mustache/mustache/mustache.py -f GSE130275_mESC_WT_combined_2.6B.mcool -pt 0.1 -o ES_…
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I built a custom Diamond database with taxonomic information included. If I search against this database and produce tabular output, I have no problem adding `staxids` to `--outfmt`.
```
diamond b…
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It seems if GOTTCHA fails to find anything, then the temp folder remains after the run is complete. Everything _seems_ to of fine, but this makes me wonder if the tool carried out the analysis correct…
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I've been unable to find any documentation or threads about whether GTF and GFF3 files are interchangeable with the -gtf flag. I would guess they are if kallisto is using an external library to rea…
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Hello,
Could somebody please explain the following to me? The format for these template files is clear as mud.
I merely want to create an owl file from the following template:
CURIE …
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I am running nextflow DSL2 multiruns and first testing it on a small no of runs 2 to see if it is working on a few runs before doing a much larger no of runs. I have a loom file that I created from pr…
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Hi. I've been enjoying using this software. However, I have found myself needing to transfer over sets from Quizlet. This has been rather tedious, as Quizlet exports its sets as copy-and-paste TSV or …
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When running blastx using paired end fastq-formatted reads as query input:
```
diamond blastx -d reference.dmnd -o results.tsv -q R1.fastq R2.fastq
```
...the job fails with the message:
`…
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A nice selling point/feature would be support for big consortia projects so they can upload authorship details/metadata for 10's-100's-1000's of authors rather than have to do it through a spreadsheet…
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I often have to import "huge" files and it is suggested to import such files in parallel. This can be "easily" done using tools like GNU parallel, but in most cases it is not so easy to do it right (f…