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I am trying to segment 3D tiff cell images with Omnipose but am running into a shape mismatch error. I am following the example code on the [Omnipose documentation](https://omnipose.readthedocs.io/exa…
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Hi,
If I used 2D configuration for a volumetric image, is the evaluation metric computed for the 3D volume or per 2D slices and then aggregating?
Thanks
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There are a few possible further (efficiency optimization) for the 3d segmentation:
- Parallelize the 3d segmentation over slices if the full amg state is precomputed
- Parallelize the closing preco…
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I am trying to obtain a 3D segmentation result from what I believe is the way to do so. I am not using `PRIOR_SEGMENTATION` in this run.
1. Specify `z` column name in the `MOLECULES_CSV` via `'-z'`…
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MITK tool is really useful to display the dicom images and labelled images rapidly.
There is a critical issue when using the segmentation tool.
The button of Add and Subtract tool in the segmentatio…
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When you run the command pip install segmentation_models_pytorch_3d, you always receive an error:
ERROR: Could not find a version that satisfies the requirement segmentation_models_pytorch_3d (from…
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Hello,
thank you for your excellent work! I have two questions about your 3D instance segmentation:
- Why are TP instances below the threshold not added as false positives (FP)? Another else fo…
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Hi,
is it possible to modify this repo for instance segmentation? I would like to segment single class and differentiate objects in slices of 3D volume. please advise
thank you
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Use existing X and Y position. map Z value to intensity
Function Params:
- 2D DRR
- 3D Segmentation
Returns:
- 2D segmentation
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I have generated a grasp for the "3D_Dollhouse_Happy_Brother" object as can be seen in this image:
![image](https://github.com/PKU-EPIC/DexGraspNet/assets/31558837/30158b03-043d-4b2b-8caf-e34f1216242…