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First off, I just want to say a huge thanks for creating such an awesome tool.
I thoroughly enjoyed the ADMIXTOOLS paper published in eLife and found it very informative.
My query pertains specif…
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Hi all,
I am still a bit confused about model selection and it would be great to have some input. I first ran the find_graphs command to generate some graph for a dataset with 5 populations and va…
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I added a admixture to a graph using add_an_admixture2, getting a new list of graphs. But I found redudancy in this list, see below:
> example_graph example_list_3 plot(example_list_3[[1]])
> pl…
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Hello
I have a set of populations related to wheat, some are domesticated and some not. Therefore, I am almost cretin which populations should be with early split and donors of admixture. However, wh…
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Hi there,
In the older version of `find_graphs`, `find_graphs_old`, I see there's an argument `numrep` that allows for multiple runs of the same parameter arguments through one function call. Just …
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Hi, first of all, many thanks for developing and maintaining this software.
I have been using the **find_graphs** command in AdmixTools2 for analyzing population data. However, I have noticed signifi…
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Hi, I am trying to run `find_graphs()` but if I submit an initgraph, I keep getting this error
```
> find_graphs("./data_pops_qpGraph",initgraph=igraph_to_optimize)
i Reading precomputed data for…
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The origin of the plant is the subject of debate.[26][27][28] O.F. Cook was one of the earliest modern researchers to draw conclusions about the location of origin of Cocos nucifera based on its curre…
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When I run RFMix, it seems to get to the "generating simulation samples" stage within a few minutes, but stay there for 30+ hours. I've been running on 20 threads, 120GB with just chr 21 (~120k snps),…
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Hey,
I tried using Admixtools2 and I used the function compare_fits to test which qpgraph is a betterfit for my data.
I used it in the following way:
graph1=winner$edges[[1]]
graph2=winner2$edge…