uqrmaie1 admixtools issues

uqrmaie1 / admixtools

https://uqrmaie1.github.io/admixtools

71 stars 14 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Installation / Update error

#77 AimSmall37 closed 1 week ago
4
possible to get worst residuals from `find_graphs` models?

#76 laufran opened 3 weeks ago
1
Suggestion: Change to p_emp calculation in compare_fits()

#75 YourePrettyGood closed 3 weeks ago
1
Problem making f2 file from plink .bed .fam and .bim files

#74 sbird1000 opened 1 month ago
6
Issue with extract_f2

#73 jaurbanChicago opened 1 month ago
2
running many replicates of find_graphs?

#72 laufran opened 2 months ago
1
Issue with f3 and f4

#71 freshspaceoctopus opened 2 months ago
2
qpAdm computation stucks when the num. of letf pops below 3

#70 nihilistshaman closed 2 months ago
0
qpWave returning one fewer ranks than expected

#69 breslie opened 2 months ago
1
auto_only: change default value to FALSE

#68 bergstand opened 3 months ago
1
Comparing graphs with compare_fits

#67 ndussex opened 3 months ago
2
keyword argument typo lack of error

#66 laufran opened 3 months ago
3
Inconsistent bootstrap significance testing

#65 theo-atkinson opened 4 months ago
5
please add tags/releases

#64 jowodo closed 4 months ago
2
Error in if (gimp > 0 && gimp%%plusminus_generations == 0) { : missing value where TRUE/FALSE needed

#63 diegovelizo opened 5 months ago
2
Behavior affected by other R packages?

#62 diegovelizo closed 5 months ago
2
Zero drift edges

#61 santiago1234 closed 5 months ago
2
large difference of f3 result between admixtools and admixtools2

#60 hungweichen0327 opened 7 months ago
1
est_to_boo does not preserve the SNP block names (number of SNPs), but est_to_loo() does. Is that intended?

#59 diegovelizo opened 7 months ago
2
Do qpWave, qpAdm, and f5 have requirements on the minimum number of individuals for each population?

#58 maruiqi0710 opened 7 months ago
1
qp3pop unique_only does not work as expected

#57 RvV1979 closed 7 months ago
2
Protocol Advice: Establishing a t hresholds for the number of allowed admixture events

#56 santiago1234 opened 8 months ago
3
Explanation of the functions qpdstat and qpf4ratio

#55 maruiqi0710 opened 8 months ago
1
The order of pops in outgroup f3 test

#54 hungweichen0327 closed 9 months ago
2
Error in parse_qpadm_output

#53 jaurbanChicago opened 9 months ago
1
Optimization unsuccessful (constraints inconsistent). Try increasing 'diag', when running qpgraph with a graph and upper and lower bounds

#52 jaurbanChicago opened 9 months ago
2
evaluation nested too deeply: infinite recursion / options(expressions=)? in find_graphs() when using initgraph

#51 jaurbanChicago opened 9 months ago
13
error when running extract_f2 and qpfstats set as TRUE

#50 jaurbanChicago opened 9 months ago
1
Feasibility inconsistency between qpadm_rotate with full_results and without full_results

#49 idaios opened 9 months ago
7
$f4 missing from qpAdm

#48 ghost closed 11 months ago
1
block_size_issues

#47 borletti closed 11 months ago
6
Error in satisfies_constraints(...) when using admix and event constraints with find_graphs

#46 Tharsikav opened 11 months ago
2
slice_sample error in find_graphs

#45 rossibarra opened 1 year ago
1
Outgroup f3 statistics not working with pseudohaploidized data.

#44 Hjorvik opened 1 year ago
2
running find_graphs with the initgraph parameter

#43 fangdm opened 1 year ago
3
Do I need to run LD Prune before running ADMIXTOOLS 2?

#42 maruiqi0710 opened 1 year ago
1
Update tutorial page 'parallelization'

#41 Banthandor opened 1 year ago
1
How to determine whether the score is reasonable in qpgraph

#40 jackzhong1995 opened 1 year ago
1
Remove unused time parameters

#39 janxkoci opened 1 year ago
0
D statistic estimation

#38 juanenciso14 closed 11 months ago
4
What should I do with "The 'plotly_click' event tied a source ID of 'src' is not registered"?

#37 sttongjai opened 1 year ago
1
Distances between populations.

#36 smd555 opened 1 year ago
1
Zero drift edges

#35 Agenetics opened 1 year ago
2
Add graph_to_lgo & update write_dot

#34 ulasisik opened 1 year ago
0
How to constrain find_graphs search?

#33 dosshra opened 1 year ago
3
extarct_f2_subset does not copy block_lengths file

#32 dosshra opened 1 year ago
2
Errors when reject_f4z applied in find_graphs

#31 ZheCai opened 1 year ago
1
Suggestion: Running extract_f2 for a very large dataset (600 ind. x 18,000,000 snp)

#30 wjaratlerdsiri closed 1 year ago
2
Question: The difference of qpAdm/qpWave model fitting between Admixtools 1 and 2.

#29 dongkeeeee opened 1 year ago
3
what is the output of compare_fits and what does it mean?

#28 anubhabkhan opened 1 year ago
7