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So, anything using rust that doesn't use the `cargo*.py` easyblocks most certainly already doesn't work, or won't work in the near future.
Retroactively fixing them is hard; the cargo lock and such…
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Hello,
I'm adding STARsolo to [nf-core/scrnaseq](https://github.com/nf-core/scrnaseq) and am realizing that there isn't support in MultiQC for the AlevinQC module. Would it be possible to "simply" em…
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### Description of feature
I'm following up on a slack post that I put out 2 months ago at https://nfcore.slack.com/archives/CHN5BV5DW/p1712178056321859
I had a question about the fastq format nee…
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When I used the example data to test the program, I get an error
```bash
Error in file(con, "r") : cannot open the connection
Calls: readLines -> file
In addition: Warning message:
In file(con, "…
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Alevin is a new mode in Salmon that handles single-cell (https://github.com/COMBINE-lab/salmon) (https://github.com/COMBINE-lab/salmon/blob/1695160fe8b7585b49fd7e2a458a7f867b311ebb/doc/source/alevin.r…
roryk updated
5 years ago
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hello,
thank you for the rnaseq tutorial.
i was trying to use the script "stringtie_expression_matrix.pl" to Extract FPKM/TPM or coverage results and i used the following code:
`perl stringtie_expr…
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Hello,
Thank you for developing these suite of tools - I'm very interested in leveraging the piscem map-bulk and piscem-infer workflow to process some joint host-metagenomic sequencing data, and am h…
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**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**
Alevin single-cell mode.
**Describe the bug**
Hi, I bumped into a problem following this tutorial [https://com…
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Hi,
Thank you for developing this useful tool. I just came across the paper in Nature Communications; congratulations! My lab develops the `alevin` tool, which is currently supported in `single…
rob-p updated
2 years ago
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Hello,
I am doing single nuclei RNA seq and have issues with cellranger discarding lots of reads and would like to directly compare between optimizing the cellranger reference to deal with overlaps e…