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compbiomed
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singleCellTK
Interactively analyze single cell genomic data
https://camplab.net/sctk/
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Incorporation of SCTransform and the ... argument into runDoubletFinder
#762
fauxrest
opened
2 weeks ago
0
Seurat metadata update
#761
mingl1997
opened
1 month ago
0
Devel
#760
joshua-d-campbell
closed
1 month ago
0
Bioc update v2.14.0
#759
joshua-d-campbell
closed
1 month ago
0
report fixes
#758
salzcamino
closed
2 months ago
0
more GSVA fixes
#757
joshua-d-campbell
closed
2 months ago
1
prep for BioC release
#756
mingl1997
closed
2 months ago
0
Fixes for BioC release
#755
mingl1997
closed
2 months ago
0
Devel
#754
joshua-d-campbell
closed
2 months ago
0
Devel
#753
joshua-d-campbell
closed
2 months ago
0
setRowNames affects UMAP Clustering
#752
MrModenait
opened
2 months ago
0
Weird error with reportCellQC function
#751
yingzhang121
opened
2 months ago
0
Improved Matrix versioning and HTAN output
#750
mingl1997
closed
3 months ago
1
Seurat marker genes
#749
akshayarav
closed
2 months ago
1
Problem running DecontX in sctk-shiny latest docker image
#748
KarlKaise
opened
4 months ago
1
MapValues functionality
#747
nathanpalamuttam
opened
4 months ago
0
Merging v2.12.2
#746
joshua-d-campbell
closed
4 months ago
1
function "as_cholmod_sparse" not provided by package "Matrix"
#745
Prsisteer8591
closed
4 months ago
2
Devel
#744
joshua-d-campbell
closed
4 months ago
1
subsetSCECols: S4Vectors::metadata(inSCE)$seurat$obj: $ operator is invalid for atomic vectors
#743
kkmarkel
closed
4 months ago
1
Workflow Changes
#741
akshayarav
closed
2 months ago
0
Updated description and Seurat functions
#740
mingl1997
closed
5 months ago
0
v2.12.1
#739
joshua-d-campbell
closed
5 months ago
1
plotSeuratGenes
#738
salzcamino
closed
5 months ago
0
Edited Dockerfile to point to master
#737
mingl1997
closed
5 months ago
0
Docker image on local server
#736
KarlKaise
closed
5 months ago
1
Fixes for errors and documentation
#735
mingl1997
closed
5 months ago
0
Problem loading docker/singularity image
#734
KarlKaise
closed
5 months ago
1
Updating docs for v2.12.0
#733
joshua-d-campbell
closed
5 months ago
1
Seurat workflow updated
#732
npervaiz
closed
5 months ago
0
singularity container missing package optparse
#731
JHYSiu
closed
5 months ago
1
Added support for loose file import
#730
mingl1997
closed
5 months ago
0
Updated Harmony documentation
#729
irzamsarfraz
closed
8 months ago
2
TSCAN and Seurat updates
#728
salzcamino
closed
8 months ago
1
Preparation for BioC release
#727
mingl1997
closed
8 months ago
1
Solved warnings and notes from BiocCheck
#726
npervaiz
closed
8 months ago
1
Devel
#725
joshua-d-campbell
closed
8 months ago
1
write renameClusters function with corrected functionality
#724
nathanpalamuttam
closed
5 months ago
1
Fixing reproducibility/seed issues with multiple functions
#723
irzamsarfraz
closed
8 months ago
1
runCellQC on multiple samples
#721
cmtom
closed
9 months ago
1
Prepare for upcoming Seurat v5 release
#720
Gesmira
closed
4 months ago
1
Try/catch wrappers for SoupX and Scrublet
#719
mingl1997
closed
9 months ago
1
Fix to seurat subset issue and updated screenshots
#718
irzamsarfraz
closed
9 months ago
1
Made changes to the SingleCellTK GUI for BubblePlot plotting
#717
akshayarav
closed
5 months ago
2
Fixed STARSolo import bug
#716
mingl1997
closed
9 months ago
1
Providing a vector for the mitoID argument in runCellQC causes an error.
#715
fitz-meyer
opened
9 months ago
2
Fixed AnnData export bug
#714
mingl1997
closed
9 months ago
1
Updates to import
#712
irzamsarfraz
closed
11 months ago
1
Edited description
#711
mingl1997
closed
11 months ago
1
Rebuilt documentation in preparation for 2.9.2
#710
mingl1997
closed
11 months ago
1
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