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accumulate papers describing oligotypes and amplicon sequences and exact sequence variants
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Hi,
I'm experimenting with running COMPASS (using CNVs) with multiple samples (3 samples), where the cells then come from different runs with MissionBio. A problem is that they got sequenced at dif…
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### Ask away!
I am running the wf-amplicon on PCR amplicons covering a complete virus genome (4 overlapping long amplicons per sample, pooled in one barcode) and map the reads to a reference genome o…
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Accumulating a bibliography of papers describing oligotypes and amplicon and exact sequence variants
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We want to start to accumulate a bibliography of papers that describe oligotypes and amplicon and exact sequence variants. Add new references to this thread.
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[Suggestion to add amplicon resequencing data-processing functionality, brief description of new scripts to aid in this, and request for guidance on unit testing or code review]
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## Justification …
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Spin out from #26, I picture adding a ``-m``, ``--method`` option to ``thapbi_pict prepare-reads`` to control which preparation pipeline is run, and one of the options should be using dada2 for error …
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Hi,
I am running ARTIC pipeline v1.2.1, and I found that there may be an issue in case an amplicon coverage is exactly equal to 20. In that case, Nanopolish is not calling the variant (nanopolish var…
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Hello,
I was wondering if you knew of any good publicly available datasets for the V3 Artic Tiling Amplicon sequencing of hCoV-19. Ideally I would love to have a test dataset showing each of the v…
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Hi all,
I just noticed that the website states what I think is incorrect information:
Q: Why do some entries have more than one light and/or heavy chain sequence?
A; We are displaying any retu…