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While investigating an issue opened by a user on GitHub I have discovered a problem with the gCSI_2017 mutation data. It appears that the matrix contains expression values instead of the normal string…
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Hello,
Here is my command:
`python /Users/bgold/HemTools/bin/bed2vcf.py -f PanelBmosaik.bed --required_cols chr,pos,ID,ref,alt --info_col QUAL,DP,VD,AD,AF,RD,ALD,Func.refGene,REFGENE,GeneDetail.…
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Hi @YinLiLin,
I found your package very useful, thanks! In my case I'm plotting allele frequency not the p-value but I guess it's also possible... but I'm having an issue I cannot understand (and f…
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MSID: 88024
Version: 4
Preprint DOI: https://doi.org/10.1101/2023.05.25.542290
## Step 1. Awaiting reviews
**Editorial to post reviews via hypothesis**
**Useful links:**
- DocMap: https://data-hu…
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I dont fully understand why the predicates differ so frequently, when I read them in the UI, I'm not sure I understand how substantially different to the reasoned answer
"Tamoxifen Causes Decrease…
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I am attempting to fine tune and train a model to extract the fields highlighted in yellow in the sample reports here. My results are not good when testing the model and I'm looking for some guidance …
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```enrich
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Hello,
I am using the cnvkit 0.9.9 in order to obtain copy number variants across a tumor-normal cohort.
The tumor and corresponding normal sample libraries were prepared using hybrid capture. I a…
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The cancer biomarker schema contains a `variant` field, however as the variant index integration that name should be reserved to the variant index. For this purpose the following updates should be mad…
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when I was running infercnv,I set parameters as follows:
infercnv_obj = CreateInfercnvObject(raw_counts_matrix=expFile,
annotations_file=groupFiles,
…