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As I've gone and added more and more steps to the `rworkflows` actions, I haven't really paid much attention to the R package caching steps. These were originally adapted from `biocthis`, and use the …
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Hi,
You might want to consider getting in touch with Kevin @kevinrue who has been working on some documentation on how to make a Bioconductor package. See https://bioconductor.github.io/bioc_mentor…
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Not tested on Mac OS or Windows: don't know how to because I don't have access especially to Windows system. Didn't hear good suggestions from Slack discussion.
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This has been answered in s…
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I don't have the links handy right now, but I would double check with `rOpenSci` folks because they might have books already on this topic or similar ones. Just to avoid duplicating efforts. We can as…
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Codecov made upgrades a while ago that obviated the need for `codecov.yml` files (or codecov tokens) in your GitHub repo.
So unless there's some other functional use for this file, we should remove…
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If trying to submit a package with large amounts of data --package should ideally use existing data (as there are many forms already in Bioconductor) -- if that isn't possible data should be reduced o…
lshep updated
4 years ago
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Dear `usethis` team,
Thanks for continuing to maintain and upgrade this incredible suite of tools! I wanted to reach out and make you aware that our team has developed a GitHub Action called `rwor…
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My package implements some S3 methods for classes which are defined by packages in Suggests. Before using those packages in the methods, I check for the presence of the relevant packages using `requi…
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## Description of the issue
The function _"recount::getTPM(rse)"_ returns the unexpected error message: _'Error: subscript contains invalid names'_.
Below, is a reproducible example that I have…
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When I ran `BiocCheck::BiocCheck` in the console, it finds deprecated packages but fails to print out their names, leaving a very confusing message like the following:
```
> BiocCheck::BiocCheck('~/…