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As reported https://github.com/IDR/idr-metadata/issues/696#issuecomment-2188560610
- Image:38517 & Image:40053 - 5th & 7th plates of idr0008 (58 plates)
Viewing in webclient: `message = Error inst…
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**In Short**
Zeiss Scanners produce multi-scene images and while BioFormats can read these files, they cannot be viewed together in a 'Whole Slide' view which is acceptable to pathologists. Attempts…
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Hello,
Original post: https://forum.image.sc/t/pyramidometiffwriter-really-bad-performance-when-closing-the-writer/95294
There is a (very big) performance issue when saving an OME TIFF file wit…
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idr0001 has 192 x 96-Well Plates, 6 acquisitions each.
1 Plate converted [below](https://github.com/IDR/idr-metadata/issues/683#issuecomment-1886903270) is 47 GB.
Approx 4.5 TB in total.
bioformats…
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Should look into extending support to bioformats given the end-of-life of openslide
https://pythonhosted.org/python-bioformats/
Issues will be that the dependencies skyrocket as bioformats is ja…
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Looks like bioformats is finding the actual channel names for a file that it wasn't before thereby messing with a tests expectation.
[See here](https://github.com/bioio-devs/bioio-bioformats/action…
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1) I'm interested in loading .oir files using your BioformatsReader. OME Bioformats added support for Olympus's .oir files with version 5.5. By upgrading the loci_tools.jar file that Pims uses, I wa…
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## Installation error
Thank you for this fabulous program!
I tried to install punctatools on my windows using wls2 ubuntu 22.04, macOs 13 and my GPU machine running Centos 7, all failed during ins…
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consider:
- https://r-pkgs.org/license.html
- https://drive.google.com/file/d/1_L7Vq2fKjJupIXNr0Cx2deN_EJ2I2gvk/view
questions to consider:
I call/dynamic-link functions from lgpl3-licensed p…
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In particular:
- [ ] OMETiffReader
- [ ] OMETiffWriter
- [ ] TiffWriter?
- [ ] FakeReader
See comments in https://github.com/ome/bioformats/pull/3992#pullrequestreview-1754852581 and https://…