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Hi Brian,
I have a couple of bioinfo tools that I "ported" to modal (blat, STAR, https://github.com/tdsone/modal-rna-seq-pipeline). Do you think this would be useful in biomodals as well (biomodal…
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Hello,
I am trying to install TDF, however i am facing the following issue after running rgt-TDF promotertest
rgt-TDF promotertest
Traceback (most recent call last):
File "/home/charbel/mini…
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Need to add option to read a local file resulting on running delims on webserver, e.g.
https://bioinfo.mnhn.fr/abi/public/abgd/abgdweb.html
https://bioinfo.mnhn.fr/abi/public/asap/asapweb.html
h…
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Hi
I have noticed that `samtools consensus` command always uses 1 thread despite more (-@ 8) threads have been specified in the command. As shown in the processing time stats below, multiple thread…
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Tried to convert a non coding RNA GTF file and failed with:
```
Traceback (most recent call last):
File "/bioinfo/apps/all_apps/miniconda3/envs/gtools/bin/gfftk", line 8, in
sys.exit(main()…
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Ask @agarwal if he has good benchmarks.
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When going through the SAM file read-by-read each time it is checked if that read is a uniquely mapping read or a multiply mapping read. The implemented approach splits the line into fields separated …
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When trying to apply this code to my data, I ran into the issue that the local variable `mul_count_list` was used/referenced before it got assigned/initiated. Background here is that the dictionary `d…
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Bioinfomatics-roadmap: https://docs.google.com/document/d/1s0U9rd4fYCTZ5jnTKDqzli3mpKVS6rQwullxg6OVHRw/edit
wiki: https://wiki.oicr.on.ca/display/icgcargotech/Bioinformatics+Roadmap
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* phold version: version 0.2.0
* Python version: Python 3.11.9
* Operating System: Linux sil1c4u26-admin7 3.10.0-957.el7.x86_64
### Description
phold run -i ./pharokka_output/pharokka.gbk …