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Port some of Art Poon's bioinformatics [tutorials] to use live coding in the browser. The [Python tutorials] might also be useful.
[tutorials]: https://artpoon.github.io/BioID/README.html
[Python …
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There are existing resources that we can point to as starting point:
- [Alli's Epi Handbook](https://alliblk.github.io/genepi-book/)
- [Nextstrain VEME tutorial](https://github.com/blab/veme-2022) …
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We're not going to have a chance to teach statistics in the Genomics Data Carpentry workshop, but it would be nice to have some resources to point people towards.
Do people have recommendations for …
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This work began as https://github.com/nextstrain/nextstrain.org/pull/170, but post-migration will need another look here. The idea was merging / reducing any duplication between:
1. https://nextstrai…
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The bioinformatics community has assembled some great software package repositories such as Bioconductor and Bioconda (and probably others I'm not aware of).
Scientists who create new tools should tr…
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Produce a step-by-step help guide to using TeSS.
See DReSA's guides for reference:
- https://dresa.org.au/DReSA-User-Manual.pdf
- http://videos.dresa.org.au/
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- [x] Introduction to Biological Databases
- [x] Introduction to NGS sequencing
- [x] Introduction to sequence alignment
- [x] Introduction to Phylogenetics
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Hey @fmalmeida, I loved this gifs, they're very beautiful and could be easily be deployed as stunning tutorials examples for new users, really appreciate them!
I just would like to know a little bi…
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Can we (as a starting point) start to collate these together?
There was a list of about 10 in a meeting - listed below. But straight away I can see that we will need to catalogue them to make this …
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The README should include the source of a simple Biokepi pipeline (align FASTQs, call germline variants) and link to a tutorial which highlights the use of common bioinformatics tools.