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Brief point form style internal document to describe the current data management situation (data holdings, locations, managed vs unmanaged) and identify key stakeholders and important contextual infor…
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Hello everyone,
I am using the script below to construct the network of regulated genes (up or down) related to biological processes and associated logFCs, however, my network only shows the gene net…
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I'm trying to find what people use to justify outliers in RNA-seq data and I found a biostars forum post about it [here](https://www.biostars.org/p/281767/) which says:
> "People generally inspect fo…
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Hello,
Thank you for this helpful software!
I have some visium data with biological replicates across several sequencing slides, what is the best way to make use of all data in a co-expression an…
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Need to add more mpr files for finalising support for Biologics. Should also get corresponding csv files generated by the Biologics software.
1. 2-electrode
* EIS
* cycles
* EIS + cycles
2. 3-ele…
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### Linux distros
https://onlinelibrary.wiley.com/doi/epdf/10.1111/ecog.03424 Is this data available? Would be super fun.
https://zenodo.org/record/1120445
### "Economic & geological"
htt…
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Greet Job! Colina and Yixuan
Fascinating Aspects
1. Biological Focus on H2AFY: Your choice to focus on H2AFY as a histone variant due to its known role in chromatin remodeling, gene regulation, a…
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For data sets without a "natural" baseline like "control", we pick randomly for the purposes of DEA.
In my review of the code, this seems non-deterministic. I suggest to increase consistency of com…
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We have received feedback that our intro notebooks "Use SpatialData with your data":
1. [I. Use SpatialData with your data: the SpatialData object](https://spatialdata.scverse.org/en/latest/tutorials…
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I'm seeking the source data for the Gene Ontology (Biological Process) in hetio for 2015. According to this [manuscript](https://git.dhimmel.com/rephetio-manuscript/), hetio contains 559,504 annotatio…