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### Overview
Biological graphs are vast and complex, with many different relationships and features under consideration. I seek to optimize graph traversal and add an intuitive user interface that ca…
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I'm seeking the source data for the Gene Ontology (Biological Process) in hetio for 2015. According to this [manuscript](https://git.dhimmel.com/rephetio-manuscript/), hetio contains 559,504 annotatio…
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Hello,
I am using Enrichr in "R" for my pathway analysis. It is not references in the package description https://cran.r-project.org/web/packages/enrichR/enrichR.pdf how to define the background in…
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The iLINCS portal can be used to search for documented perturbations connected to a certain gene.
The idea is to integrate the iLINCS API at the end of our benchmarking pipeline for biological vali…
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See https://github.com/w3c/rdf-ucr/wiki/RDF-star-for-explanation-and-provenance-in-biological-data for a clean version of this use case
** Contact information
- Your name: Jerven Bolleman
- Ho…
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_From [vasil...@ohsu.edu](https://code.google.com/u/108803237899917466626/) on December 10, 2012 12:57:18_
There are databases that are tissue banks/repositories- would be nice to link these to the o…
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_From [vasil...@ohsu.edu](https://code.google.com/u/108803237899917466626/) on December 10, 2012 12:57:18_
There are databases that are tissue banks/repositories- would be nice to link these to the o…
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Each offering of the Biological Databases course is housed in a combined MediaWiki installation + underlying database. They are currently on computer science servers and should be backed up into separ…
dondi updated
8 years ago
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### Bioengineering and Genetic Bits in Database Management Systems (DBMS) Infrastructure
#### Bioengineering in DBMS
Bioengineering, particularly in the context of synthetic biology and genetic engin…
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* Contig - One of the (many) assembled contigs from a Run
* Read - Synonym of run
* Run - Technically, sequence data as it came out from one sequencing "run". Colloquially, one entry in SRA (?)
* Sam…