-
When switching to blastn 2.15 (tried both `2.15.0--pl5321h6f7f691_0` and `_1`), there is this warning on _stderr_:
```console
The -taxids command line option requires additional data files. Please se…
-
```
ERROR for blast call 'blastn -outfmt "6 qseqid saccver qstart qend sstart send evalue staxids" -query ./id.7.tmp1 -db /data/db/databases/blast/nt/2024-08-15/nt -evalue 1 -max_target_seqs 500 -num…
-
Hi there!
I have tried multiple ways including running the docker version of blast and every time I am not able to complete the blast run. It probably is something I am doing differently, but I am …
-
@Liyancan233 李博士您好
近期看到了您的毕业论文《基于泛基因组学的东方蜜蜂环境适应性研究》对我启发很大,因此我找了您发表的SCI论文进行了精读并模仿分析。我做的物种通过比对、去冗余以及去污染之后产生了巨量大的非冗余序列(物种基因组大小在0.6g,非冗余序列达到9g),我怀疑是去冗余不彻底,因此我想使用blastn进行all-vs-all比对去冗余:**blastn …
-
Dear Emese,
First of all, thank you for creating this tool and the documentation. They are really helpful. I created a custom database to use with the blast+ command line utility. However, the result…
-
hi!
do you know what the issue is?
Traceback (most recent call last):
File "/home/projects/ku_00041/apps/wanli/F_pipeline/db/plasforest/PlasForest.py", line 236, in
main(sys.argv[1:])…
-
Hi Dr Chen:
I try to run COBRA today with
```Shell
source activate cobra
cobra-meta -f Megahit_out/611PES1/611PES1_megahit.contigs.fa -q checkv_in/611RW.fa -o COBRA/611_RW_MV_COBRA -c coverage/61…
-
May I ask you for the exact blastn parameters (adapter filtering pipe) used in the first place?
I could not find them, but will appreciate such a knowledge.
Best,
N.
-
Hey, I am trying to run the blast present in my directories , un-archived from "Tax4Fun2_ReferenceData_v2". But it seems Rstudio isn't recognizing the blastn, filetype "File" and not blastn, filetype …
-
I am running mitofinder on assembled contigs to search for mtDNA/Genomes. However, I am missing CO1 from the output. I thought maybe I just didn't capture that mtGene. However, to confirm my suspicion…