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linxingchen
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cobra
A tool to raise the quality of viral genomes assembled from short-read metagenomes via resolving and joining of contigs fragmented during de novo assembly.
MIT License
62
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Multi-bam as an input
#48
Andyargueasae
closed
3 weeks ago
2
Interrogation regarding overlap-based assemblers
#47
bhagavadgitadu22
opened
1 month ago
1
Query Regarding Terminal Direct Repeats Identification in COBRA Analysis
#46
zihengluo
closed
1 month ago
2
get_cov bug fix
#45
yayekit
opened
2 months ago
1
fix: fix handle of "6" shape path
#44
Hocnonsense
opened
2 months ago
0
ValueError
#43
lingrongjin
opened
2 months ago
0
KeyError
#42
Syutenjyo
opened
2 months ago
2
fix: fix key error caused by failed_join_potential
#41
Hocnonsense
closed
3 months ago
0
cobra-meta: error: unrecognized arguments: 2
#40
Songq-20
closed
3 months ago
1
Group Extended_partial
#39
SergeyBaikal
opened
4 months ago
1
Docker/Singularity
#38
rhernandvel
opened
5 months ago
1
Can I combine COBRA with binning tools?
#37
Wang0293
closed
5 months ago
5
new installation of miniconda I run into this error
#36
Hasanzahid10
opened
7 months ago
7
How does COBRA handle joining two query sequences?
#35
LSHillary
opened
7 months ago
1
Feasibility of COBRA for Metatranscriptomic Data
#34
shujieH
opened
7 months ago
3
Tiny dataset is available ?
#33
kazumaxneo
opened
7 months ago
0
About the usage of COBRA
#32
MengzhiJ
closed
7 months ago
4
Questions about the application of COBRA
#31
Xinpeng021001
opened
7 months ago
2
Missing `COBRA_retrieved_for_joining` contig file
#30
Vini2
opened
8 months ago
8
BLAST error
#29
1023011930
opened
8 months ago
18
refactor+feature: format code and add `trim_readno`
#28
Hocnonsense
closed
3 months ago
1
The role of cobra in classic virome pipeline
#27
xjhzjucas
opened
8 months ago
4
Update cobra.py
#26
linxingchen
closed
9 months ago
0
Usage of cobra
#25
quliping
opened
9 months ago
2
Error about blastn
#24
Songq-20
opened
9 months ago
1
cobra-meta missing
#23
Songq-20
closed
9 months ago
6
Application of COBRA to stool whole metagenome datasets
#22
jylee3247
closed
9 months ago
2
KeyError for extended_circular_fasta.write(header2joined_seq[contig2extended_status[contig]] + '\n')
#21
Chrisjrt
closed
9 months ago
15
Randomly not getting full output
#20
pck00
closed
9 months ago
6
biopython issue / GC deprecation
#19
andriangajigan
closed
9 months ago
7
Using a co-assembyl
#18
Balays
closed
9 months ago
3
KeyError with input file
#17
pck00
closed
9 months ago
6
Question on Input for cobra
#16
Hocnonsense
closed
9 months ago
0
Questions on input fasta files
#15
Hocnonsense
opened
9 months ago
61
multiple bam files
#14
DOieGYuan
closed
9 months ago
2
ImportError: cannot import name 'GC' from 'Bio.SeqUtils'
#13
funnell
closed
10 months ago
3
Input assemblies for COBRA
#12
asierFernandezP
closed
11 months ago
1
Update cobra.py
#11
linxingchen
closed
1 year ago
0
Update cobra.py
#10
linxingchen
closed
1 year ago
0
Update cobra.py
#9
linxingchen
closed
1 year ago
0
Conda installation
#8
ellasiera
closed
11 months ago
13
DTRs and ITRs
#7
bhimbbiswa
closed
1 year ago
12
BLAST options error: File blastdb_1.fa is empty
#6
pdenuyl2
closed
1 year ago
18
Do not print debug message
#5
apcamargo
closed
1 year ago
1
Cobra prints contig names and numbers without providing any clarification of what they represent
#4
apcamargo
closed
1 year ago
5
Using multiple thread/cores?
#3
bhimbbiswa
closed
1 year ago
3
Is it suitable for refinning bins
#2
Microbion
closed
1 year ago
6
input files
#1
Thexiyang
closed
1 year ago
5