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i use pip to intall cuteSV, and my command is : "cuteSV CRR302668.fastq.gz.bam Db-1_genome.fa Col-CEN_cuteSV.vcf ./".
the pogram did generate the vcf file, but i gent the results as below all the G…
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## Describe the issue
Some BND variants are missing vep annotations, while the rest have them.
## Additional information
### System
- VEP version: 113
- VEP Cache version: 113
### Full VEP…
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First of, thank you for maintaining this repository so good.
Working with it was nice, but also brought up some questions for me.
In the pycrate_asn1rt.asnobj.py the set_val() function sets the…
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Wasn't clear if support for Kuon was added to Yabber/SoulsFormats, but Witchy does not parse ALL.BND. Posting this inquiry to clarify if the intent in the past was to support it or not.
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Hi, I've noticed some discrepancies in the delly.vcf output file and what is displayed in IGV.
I've loaded .bam and .vcf to IGV. When I scroll to see the variants I see such picture:
attn = self.softmax(attn_logits)
attn…
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Exception with `assemble` for open-liberty when --parallel is enabled:
```
> Task :com.ibm.ws.org.osgi.annotation.versioning:jar FAILED
warning: No translation found for macro: repo;org.osgi:org.os…
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In AssertJ, we use the `bnd-testing-maven-plugin` for [OSGi integration tests](https://github.com/assertj/assertj/blob/97cc0f866c31a76dc705fdec0d9bdcad1cd640b9/assertj-tests/assertj-integration-tests/…
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`chr20 38428242 Minda_86 N N]chr20:38429601] . PASS SVLEN=1359;SVTYPE=BND;SUPP_VEC=PB_severus_INV4133,ONT_severus_INV4732,PB_ID_38377_2,PB_Sniffles2.INV.1AFM13,ONT_ID_27290_2,ILL_1797807068:2,ILL_Mant…
jzook updated
1 month ago