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Hello, I was trying the MERFISH mouse brain data, but the data obtained through the yao et al. paper https://www.nature.com/articles/s41586-023-06812-z#data-availability is not the same as what you s…
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Exclude around line 300, right before pooling. Can follow the thresholding code for a rough template.
Can overwrite m, don't overwrite m2.
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**Submitting author:** @arcj-hub (Jessica Archibald)
**Repository:** https://github.com/arcj-hub/MRShiny-Brain
**Branch with paper.md** (empty if default branch):
**Version:** 4.3.2 (Rversion)
**Edit…
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Could you provide some more information in the README on how data should be pre-processed and setup for training on adult brain. Also could you provide the pre-trained weights for the adult data as we…
tomjf updated
1 month ago
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* Name of dataset: Figshare brain tumor dataset
* URL of dataset: [https://doi.org/10.6084/m9.figshare.1512427.v5](https://doi.org/10.6084/m9.figshare.1512427.v5)
* License of dataset: [CC BY 4.0](h…
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- [x] script for downloading
- [x] preprocessing: subset slice section 80
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BRAIN INJURY DETECTED ON MRI SCAN INDICATOR should have 2 National Codes and a Default Code, see V3 at:
https://v3.datadictionary.nhs.uk/data_dictionary/attributes/b/brain_injury_detected_on_mri_sc…
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Hi,
First, thank you for the recent work on mouse brains. I'm genuinely excited about and the potential to accelerate some of our work. I have one quick question (as of right now, anyway):
In th…
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When I running the following command line to exact brain from T1.nii.gz, an error happened.
`from antspynet.utilities import brain_extraction
prob_brain_mask = brain_extraction(raw_img_ants, moda…
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In this issue, I explore how removing the brain and the brain stem improves the performance of the model for segmenting spinal lesions in MS.
The brain/brain stem were removed using the contrast a…