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### Title
MRI brain thermometry
### Leaders
Christian Behler (@ChristianBehler), Anna Behler (@Anna_Neurosci)
### Collaborators
_No response_
### Brainhack Global 2024 Event
Brainhack Aus
### …
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In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
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Currently in https://github.com/OpenwaterHealth/OpenLIFU-python/issues/126, we are using a default simulation grid full of water computed using [seg_method.ref_params](https://github.com/OpenwaterHeal…
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# Description
I am currently segmenting `whole-spine` dataset with [samseg](https://surfer.nmr.mgh.harvard.edu/fswiki/Samseg) tool, and would like to add these masks to the git-annex.
## Labels na…
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@cookpa @ntustison
I am running cortical thickness extraction for Brain MRI images (a batch of 4000 MRI images) and encountered a segmentation fault during processing.
The script ran successful…
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## Description
The objective would be to generate susceptibility maps of the spine and the brain using segmentations generated for the dataset `whole-spine`.
## Current state
Currently, segme…
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In this issue, I explore how removing the brain and the brain stem improves the performance of the model for segmenting spinal lesions in MS.
The brain/brain stem were removed using the contrast a…
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Hi, thanks for the great work! I am training the model with my own brain vessel dataset, I did all the segmentation masks correctly. I changed the 'num_channels' parameter from 64 to 32 due to resourc…
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Hi team,
I'm training on brain lesion segmentation task. The lesions have various sizes, from 200mL. We first feed the small and large lesion data to the nnUNet, but the average dice is not good, e…
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# User Story
As `DataCurator`,
I want `to identify whole brain size for a large number of data set from well defined atlases`
so that `further analysis can occur`
## Detailed Description
- […