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Non-linear components of the rotational Euler's EOM have not been taken into account (by myself) within the PR #1842. Probably, we (me) need to make some calculations and prepare new PR with correspon…
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It would be great to have a working example of the code for a system. It probably makes the most sense to include the code necessary to run the dynamics and do the analysis for the two dimensional Bro…
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1. The gamma in the Brownian dynamics is not clearly defined, there should be equations specifying the gamma is 6pi eta R/m, not 6 pi eta R
2. The Mass property in the brownianState object is not use…
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Right now, the integrator is chosen globally (via integ_switch).
Specific intregrators contain their own loop over all particles.
This has two weaknesses:
* some common functions like Verlet list upd…
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Many methods require only a small subset of particle properties and only traverse the particles in forward direction.
Example: Electrostatics reads positions and charges, writes forces.
Currently,…
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The Navier-Stokes equations, which describe the motion of fluid substances such as liquids and gases, are fundamental to the field of fluid dynamics. However, several challenging problems related to t…
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kaizu updated
4 years ago
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I have a question about BD. As long as I know, Brownian Dynamics should be mass-independent. But, when I went through your codes, I found it seems your implementation is mass-dependent (See line 103 o…
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Can anyone tell me what's the purpose of this code? It uses commands that apparently directly refer to C++ code. Perhaps this is outdated?
It also makes extensive use of the VTK module, but this als…
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Rough idea, might be not precise:
- Once there was no life. There was just inanimate matter, molecules flying everywhere.
- Organic matter formed into nucleic acids
- The first organic compounds …