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ecell
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ecell4_base
An integrated software environment for multi-algorithm, multi-timescale, multi-spatial-representation simulation of various cellular phenomena
https://ecell4.e-cell.org/
GNU General Public License v3.0
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update the referencing revision of pybind11
#496
YukiSakamoto
opened
3 months ago
0
Known vulnerabilities in the C library which ecell4-base depends on.Can you help upgrade to patch versions?
#495
andy201709
opened
2 years ago
0
Add cp39-cp39
#494
kozo2
closed
3 years ago
0
:green_heart: untap openssl and python2 from brew
#493
ToruNiina
closed
3 years ago
1
:green_heart: include <array> explicitly
#492
ToruNiina
closed
3 years ago
0
:heavy_minus_sign: drop python 3.5 support
#491
ToruNiina
closed
3 years ago
0
:arrow_up: update pybind11 from 2.3.0 to 2.6.0
#490
ToruNiina
closed
3 years ago
1
Attributes of ReactionRules are not inherited in `expand`
#489
kaizu
opened
3 years ago
0
Fix and speedup distance_point_to_Triangle under PBC
#488
ToruNiina
closed
3 years ago
0
:recycle: ParticleSpaceRTreeImpl
#487
ToruNiina
closed
3 years ago
0
:recycle: remove template from VolumeClearer
#486
ToruNiina
closed
4 years ago
0
Use PeriodicRTree to store triangles in Polygon
#485
ToruNiina
closed
4 years ago
0
Bump version to 2.1.0b2
#484
kozo2
closed
4 years ago
0
Bump version to 2.1.0.b2
#483
kozo2
closed
4 years ago
0
ODESimulator only accepts NetworkModel
#482
kaizu
closed
4 years ago
0
:recycle: refactoring eGFRD
#481
ToruNiina
closed
4 years ago
1
replace boost::array by std::array
#480
ToruNiina
closed
4 years ago
0
Enable to pickle observers #250
#479
kaizu
closed
4 years ago
0
:green_heart: fix appveyor build
#478
ToruNiina
closed
4 years ago
0
:rotating_light: Suppress warnings
#477
ToruNiina
closed
4 years ago
0
ecell4_base version 2.1.0b1
#476
kozo2
closed
4 years ago
0
Update count_species_matches
#475
kaizu
closed
4 years ago
1
:bento: update position of sphere.stl
#474
ToruNiina
closed
4 years ago
0
Add get_faces_within_radius to Polygon
#473
ToruNiina
closed
4 years ago
0
:fire: remove needless undef
#472
ToruNiina
closed
4 years ago
0
Boost to c++11
#471
ToruNiina
closed
4 years ago
0
:heavy_minus_sign: Use std::shared_ptr instead of boost::shared_ptr
#470
ToruNiina
closed
4 years ago
0
Fix CI
#469
ToruNiina
closed
4 years ago
0
:green_heart: fix github action; cmake is already installed
#468
ToruNiina
closed
4 years ago
1
:green_heart: use boost::mpl::list for boost < 1.68
#467
ToruNiina
closed
4 years ago
1
:recycle: remove macro, it's always C++11
#466
ToruNiina
closed
4 years ago
0
:green_heart: update OS X on Azure
#465
ToruNiina
closed
4 years ago
0
:alembic: add Boundary condition classes
#464
ToruNiina
closed
4 years ago
0
:recycle: Wrap egfrd in namespace ecell4::egfrd
#463
ToruNiina
closed
4 years ago
3
:alembic: generalize periodic R-Tree
#462
ToruNiina
closed
4 years ago
0
:recycle: add throw_exception
#461
ToruNiina
closed
4 years ago
0
:fire: remove unused code in egfrd module
#460
ToruNiina
closed
4 years ago
1
:fire: remove core linear algebra
#459
ToruNiina
closed
4 years ago
0
:fire: remove global constants
#458
ToruNiina
closed
4 years ago
0
:recycle: Remove blit_swap
#457
ToruNiina
closed
4 years ago
1
:recycle: always use std::unordered_map
#456
ToruNiina
closed
4 years ago
1
:recycle: replace boost::scoped_ptr by std::unique_ptr
#455
ToruNiina
closed
4 years ago
1
Add Python wrapper for UnitSpecies APIs
#454
kaizu
closed
4 years ago
0
OffLattice support
#453
0ncorhynchus
closed
4 years ago
2
:arrow_up: Update ubuntu and hdf5 version
#452
kozo2
closed
4 years ago
0
Locking hdf5 version
#451
kozo2
closed
4 years ago
0
#250 Make observers picklable
#450
kaizu
closed
4 years ago
0
:children_crossing: Add a custom option for the parallel build
#449
0ncorhynchus
closed
4 years ago
0
Fix the process on CircleCI
#448
0ncorhynchus
closed
4 years ago
0
Add tests for proceed
#447
kaizu
closed
4 years ago
0
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