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## Analysis Goal (What should be done / analysed?)
I'd like to create a notebook for segmenting the image below. I _think_ a seeded watershed algorithm can do it. Unfortunately, I do not have seeds…
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Hello Ming, I was wondering if 'cell segmentation' would fit this collection of spatial omics.
For example:
- Baysor, https://github.com/kharchenkolab/Baysor
- InstanSeg, https://www.biorxiv.org…
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## Bio-Image Analysis Support Request
### Image Upload
📎 **Drag & drop your microscopy image here** (JPG, PNG, GIF, 512x512 or 1024x1024, 2D only).
 ovarian pathology image (H&E stain…
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Hi team,
In the blog post titled, "Impact of segmentation errors on DE", Dr. Danaher wrote that a paper was coming (and a corresponding blog post) that will provide some solutions on how to accoun…
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What algorithms / Python packages would be suited for segmenting cells in this kind of microscopy image?
![membranes](https://github.com/user-attachments/assets/3b813c91-e001-4df0-84e2-3ca1045fdc1b…
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Possible tools:
These should be made as optional dependency
- Cellpose
- Deepcell Mesmer
- Stardist
- HoverNet
- CellViT
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Hi, first of all, thanks for developing this amazing looking package, I'm really excited to start using it!
I am having an issue using the API version. I am working on a conda environment (python=3…
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Hi Baysor Team,
I am a new-ish user to the baysor tool and have a series of Xenium samples our group is trying to re-segment. After multiple iterations of config settings it seems that I have yet t…
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> I am not sure this is exactly how I envisioned it, but this is interesting!
>
> From my perspective after looking at the example image, I find that overlaying all of these objects over the same im…
d33bs updated
1 month ago