issues
search
haesleinhuepf
/
git-bob-bioimage-analysis-example
BSD 3-Clause "New" or "Revised" License
2
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Implement background removal and visualization using a top-hat filter.
#47
github-actions[bot]
opened
16 minutes ago
4
[Analysis Request]: Background removal + visualization
#46
haesleinhuepf
opened
24 minutes ago
3
Add a Jupyter notebook for cell segmentation using the watershed algorithm.
#45
github-actions[bot]
opened
22 hours ago
4
Added a Jupyter notebook for cell segmentation using watershed algorithm to address issue #21.
#44
haesleinhuepf
closed
22 hours ago
17
Enhance segmentation workflow by converting to grayscale and fixing watershed errors.
#43
haesleinhuepf
closed
1 day ago
0
Fix grayscale image conversion and watershed mask error in segmentation analysis notebook.
#42
haesleinhuepf
closed
1 day ago
0
Enhance segmentation workflow by converting images to grayscale and fixing watershed function errors.
#41
haesleinhuepf
closed
1 day ago
0
Fixes to segmentation workflow with enhanced marker creation and corrected watershed mask.
#40
haesleinhuepf
closed
1 day ago
0
Enhance cell segmentation by converting images to grayscale and fixing watershed parameter.
#39
haesleinhuepf
closed
1 day ago
0
Fix shape mismatch error in segmentation by correcting mask parameter.
#38
haesleinhuepf
closed
1 day ago
0
Improve image preprocessing for segmentation by adjusting `peak_local_max` and correcting `watershed` mask usage.
#37
haesleinhuepf
closed
1 day ago
0
Addressed issue #33 by adjusting the watershed function for consistent image handling and error prevention in cell segmentation.
#36
haesleinhuepf
closed
1 day ago
0
Enhancements to image preprocessing and bug fixes in segmentation notebook addressing grayscale conversion and watershed function issues.
#35
haesleinhuepf
closed
1 day ago
0
Fix shape mismatch error in watershed function by updating mask parameter.
#34
haesleinhuepf
closed
1 day ago
0
Enhance segmentation workflow by converting images to grayscale and fixing watershed function errors.
#33
haesleinhuepf
closed
22 hours ago
4
Enhance image preprocessing and fix execution errors in segmentation notebook.
#32
haesleinhuepf
closed
22 hours ago
0
Fixes image preprocessing and notebook execution errors for segmentation workflow.
#31
haesleinhuepf
closed
22 hours ago
2
Fix the `TypeError` by replacing `indices` with `labels` in `peak_local_max` to enhance segmentation.
#30
haesleinhuepf
closed
22 hours ago
0
Fix `peak_local_max()` error in segmentation notebook by updating arguments.
#29
haesleinhuepf
closed
22 hours ago
0
Added `rgb2gray` to ensure consistent image preprocessing in segmentation workflow.
#28
haesleinhuepf
closed
22 hours ago
1
Fix execution and improve cell segmentation in the notebook.
#27
haesleinhuepf
closed
22 hours ago
0
Execute `segmentation_analysis.ipynb` for enhanced cell segmentation and analysis.
#26
haesleinhuepf
closed
22 hours ago
0
Execute segmentation_analysis.ipynb to enhance cell segmentation workflow with improved image processing.
#25
haesleinhuepf
closed
22 hours ago
0
Execute and fix cell segmentation analysis in a Jupyter notebook with watershed implementation.
#24
haesleinhuepf
closed
22 hours ago
0
Execute and verify the cell segmentation Jupyter notebook.
#23
haesleinhuepf
closed
22 hours ago
0
Add a Jupyter notebook for cell segmentation with watershed algorithm.
#22
github-actions[bot]
closed
22 hours ago
0
[Analysis Request]: Cell segmentation
#21
haesleinhuepf
opened
1 day ago
8
Executed the segmentation_analysis.ipynb notebook for enhanced watershed cell segmentation.
#20
github-actions[bot]
closed
1 day ago
0
Cell segmentation using enhanced watershed and background subtraction in a Jupyter notebook.
#19
github-actions[bot]
closed
1 day ago
2
Executed the cell_segmentation.ipynb notebook for cell segmentation with watershed and background subtraction.
#18
github-actions[bot]
closed
1 day ago
0
Cell segmentation using watershed and background subtraction implemented in a Jupyter notebook.
#17
github-actions[bot]
closed
1 day ago
1
Implement cell segmentation with watershed and background subtraction in a Jupyter notebook.
#16
github-actions[bot]
closed
1 day ago
0
Add watershed-based cell segmentation and "scipy" mention in issue template.
#15
github-actions[bot]
closed
1 day ago
0
Add 'membranes.png' for cell segmentation using watershed in response to Issue #12.
#14
github-actions[bot]
closed
1 day ago
0
Added a Jupyter notebook for cell segmentation using the watershed algorithm in the "notebooks" directory.
#13
github-actions[bot]
closed
1 day ago
0
[Analysis Request]: Segmenting cells
#12
haesleinhuepf
closed
1 day ago
15
Fix typos in README.md to improve clarity and professionalism.
#11
github-actions[bot]
closed
2 days ago
0
Typos
#10
haesleinhuepf
closed
2 days ago
0
Add colocalization analysis notebook using downloaded fluorescence microscopy image.
#9
github-actions[bot]
opened
2 days ago
0
Add a Jupyter notebook for colocalization analysis.
#8
haesleinhuepf
closed
2 days ago
0
Add a Jupyter notebook demonstrating colocalization analysis using fluorescence microscopy images.
#7
github-actions[bot]
closed
2 days ago
1
Colocalization / co-expression image analysis
#6
haesleinhuepf
opened
2 days ago
5
Add notebook for segmenting and counting blue channel objects with explanations.
#5
haesleinhuepf
closed
2 days ago
0
Segmenting images
#4
haesleinhuepf
closed
2 days ago
2
Add a notebook for segmenting and counting nuclei using skimage.
#3
haesleinhuepf
closed
2 days ago
0
Added a Jupyter notebook for nuclei segmentation using scikit-image.
#2
haesleinhuepf
closed
2 days ago
1
Segmenting an image and counting nuclei
#1
haesleinhuepf
closed
2 days ago
6