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If my samplSheet has more than 2 conditions CSAW fails.
Is it possible to split the samples by condition so that CSAW will do a one to one comparison?
example of sampleSheet:
```bash
name condi…
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Hello, I'm trying to replicate your prediction results for "CD4-positive_helper_T_cell-ENCODE" published in [Nature at 2021](https://www.nature.com/articles/s41586-021-03446-x#Sec9): as shown in the […
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- [x] mRNAseq DESeq2
- [ ] mRNAseq sleuth
- [ ] noncoding RNAseq
- [ ] WGBS
- [ ] ATAC-seq
- [ ] ChIP-seq
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Dear TOBIAS providers,
**I have noticed to loose positive binding sites (after TOBIAS analysis) of TFs that we know (through ChIP-seq analysis) to be actually binding regions within our input.**
…
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Create a workflow for peak calling VISION ChIP-seq datasets that (as closely as possible) matches the ENCODE best practices pipelines. ENCODE pipelines are [here](https://github.com/ENCODE-DCC/chip-se…
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It is not clear from docs if pileup support chip-seq tracks (narrow/broad peaks files). If yes, then it would be nice to see an example if no, then it would nice to know if the feature is in plans?
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/akbariomgba/crupR
Confirm the following by editin…
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Add functionality to visualize methylation patterns or ChIPseq results. This needs good example data first.
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## 1. TF narrow peaks CTCF in human
- [3 replicates](https://www.encodeproject.org/experiments/ENCSR414CQB/) IP
- [3 replicates](https://www.encodeproject.org/experiments/ENCSR382EJS/) Input
- Par…
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Hello Genrich developers,
First off, thank you for creating a great tool. It's been easy to use so far. I was wondering if there is anyway to input a custom chromosome size file for hg19? For insta…