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作者你好!
在我使用的过程中,我对自己制作的参考矩阵运行CIBERSORT解卷积的时候发现运行很慢,然后对原函数进行了修改,添加了并行参数。修改后的代码放在了我的github库,供你们使用’https://github.com/amingson/Cibersort_doParallel-‘。
祝好!
Anler
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excuse me ,I am facing an issue when running CIBERSORT package:
when I try this:
```
library(CIBERSORT)
sig_matrix
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Hi,
When I try to run cibersort, I run into the following error:
> res
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When I tried to use my own data, I got the bug information. I tested using the sample data, it worked. But my data was failed to run.
fit
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Hi folks,
I have a simple column of TPMs that works well with MCP, TIMER, EPIC, all from within immunedeconv.
My TPMs are in a matrix with the following format:
```
head hgnc_tpm.csv
HGNC TP…
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CIBERSORT web interface: https://cibersort.stanford.edu/
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Thanks so much for fixing my other issue so fast!! For this one, when making the model, I had already written my input file in the correct format to a directory and was just passing in the filename in…
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Hi all,
the reason of this error is the use of an unofficial version of the `CIBERSORT.R` script (most likely downloaded from https://github.com/IOBR/IOBR/blob/905127ffa32aee5e1fa6c3…
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As you descriped in vignettes, I re-run the cibersort.Rmd in your processed datasets with code:
```
CIBER
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To Whom it may Concern,
I'm trying to run CIBERSORT as part of the immunedeconv package, and the following error message appears:
Warning message:
The `path` argument of `write_tsv()` is deprec…