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### Title
CiftiPy
### Short description and the goals for the OHBM BrainHack
`cifti` is a neuroimaging file format that flexibly stores vertex and voxel data in the same file. It's the format…
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These workflows need updating. May also be a good opportunity to add targeted unit tests for different input file formats (NIfTI, CIFTI, TSV) and docstrings.
### Resampling to the surface
- [x] …
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Hello @yetianmed,
Thank you for making this atlas available in volumetric space and in cifti format. I believe in order to extract freesurfer data, I need the surface files to be in .annot format, …
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This is just an idea, and I'd like to hear feedback @akhanf @royhaast @myousif9 @Bradley-Karat
I was thinking it might be nice to concatenate label-`hipp` and `dentate` output files (they would st…
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Hello!
I was trying to use hcp-utils on some of the 7T data from HCP, which has a shape of (921, 170494). So the number of grayordinates is 170494 instead of 91282. However I noticed that in hcp-util…
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Hi,
I'm planning to use PALM in a scenario in which spatial proximities used in spatial statistics (clustering) are defined by the user. I was wondering if there's room for implementing such a feat…
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I see from the source code you support NIfTI-1, but it's unclear if you support NIfTI-2 too, and both endian formats.
https://brainder.org/2015/04/03/the-nifti-2-file-format/
I think it should b…
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Hello,
I have a few questions about applying this code to my data.
The documentation says the usage is:
./x_gradient.sh PathToFile/
What is the procedure for creating the file, and w…
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Hello,
I am attempting to run a group GLM of subject level results. For each subject (M=68), I have the `_left.rds`, `_right.rds` and combined `.rds` file saved out from the subject-level run. Each…
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Hi,
I have an error when running latest pybest with cifti files.
Here is the command I use :
```
pybest /scratch/mszinte/data/PredictEye/deriv_data/fmriprep_new/fmriprep/
/scratch/mszinte/data…