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### Description of the bug
Hello,
I recently encountered an error while running CIRIquant when providing a specific GTF file. Other tools, such as circRNA_finder, run without any issues and perfor…
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### Description of the bug
Hello,
I am trying to run nf-core/circRNA on sncRNA samples, and I encountered an error during the annotation part for some of the samples. I noticed that the samples wi…
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### Description of the bug
Hello!
I am trying to solve the following error, but I am not able to use the parameter `--limitSjdbInsertNsj` to resolve it.
Thank you very much for your time and …
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Hello,
I have a question regarding whether or not there is a limit to the number of samples used with the CIRI_DE_replicate command in the differential expression portion of the CIRIquant pipeline…
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- switch modules to containers (#42)
- remove any biowulf-specific code from driver script
- remove hard-coded biowulf paths from config, or document them well
- test on FRCE to verify that it work…
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Hi egaffo,
I'm trying to run circompara on my samples, but I got the following error:
finished circRNA detection from file samples/S1/processings/circRNAs/star_out/Chimeric.out.junction
dcc_fix_s…
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Dear Professor,
Hello, thank you for your team's development of CIRIquant, an excellent tool. I have a question that needs your help. I want to know how to obtain the mature full-length sequence of…
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Dear Sir or Madam,
I am trying to use the Ularcirc to visualize the circRNAs I found. I just followed the installation pipeline but failed with the error info:
package ‘yaml’ successfully unpack…
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**进行该任务需要基本掌握 Linux 操作**。 @JianGuoZhou3
> 问题反馈和交流请联系诗翔 @ShixiangWang 。
>
> 后续跟进实际问题进行补充 QA 和视频交流。
## 1. 准备
1. 获取对应服务器的 CircRNA 账号:目前建国有 2 台服务器已经安装和配置过 circrna-pipeline 流程,使用者根据对应数据存储的服务器,获…
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Dear Jiang Li,
Thank you for developing nice pipeline! I think your pipeline is very useful.
I wonder if you could help me understand the count data from Annotation module.
What is the unit of…