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Hi , I am reading and running the codes of your article. But I have a question, for example, from a generic model like Human_1_17.mat, how did you make tissue-specific models like blood, kidney, hear…
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### Checklist
- [X] There are [no similar issues or pull requests](https://github.com/opencobra/cobrapy/issues) for this yet.
### Problem
I been trying to work on some metagenome analysis with cobr…
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Hi,
I'm trying to download the Pexpansum model and read it using cobrapy.
I'm getting an error on cobrapy that the sbml model is not valid.
do your models works with cobrapy?
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The function find_gene_knockout_reactions from the cobra.manipulation.delete was deleted in the 0.25.0 realease of cobrapy. The FSEOF method gives an error using newer versions of cobrapy.
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I can't read `xml` file of model using _COBRApy_ due to the issue below:
> ValueError: Names cannot contain whitespace characters. "coniferyl alcohol_c[c]" contains whitespace character " ".
[Sb…
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### Description of the issue:
Continuation of #102: Currently both matlab and python users can load the model without loosing any fields, but only matlab users can contribute. This issue is to keep t…
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### Checklist
I have an implementation of a nonlinear optimization problem for thermokinetic regulation using IPOPT, which is called through pyomo.
I would like to integrate that algorithm into …
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Problem description
I cannot install Cobrapy in Anacoda I get this error "chr(c) # raise ValueError for invali…
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This is an issue I think is due to updates in `cobra`. With `cobra` version 0.21.0 `create_smoment_model_reaction_wise_with_sbml()` runs in a reasonable amount of time. However, once I use an environm…