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Hi,
Do you think it's possible to use the existing `topr` functions to create a colocalization plot? Specifically, multiple locuszoom plots are superimposed on each other with a shared gene track at…
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Hello,
First of all, congratulations on the great paper in Nature Genetics!
I have been looking for the code underlying the co-localization analyses. The paper says it is on github, but I cann…
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* [x] merge Colocalize command for global methods
* [x] finish SACA code (see below comment)
* [x] wrap SACA code in Ops
* [x] add SACA Op to Colocalize command
* [ ] MTKT needs some TLC !!! (see …
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I have a question, how do you choose the locus for co-localisation when co-locating? The original text says so: "We used default parameters to evaluate colocalization between GWAS signals and the expr…
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Hi Karl, I am hoping to use CAFEH-S to carry out colocalization on eQTLs ver GWAS for side-by-side comparison with coloc results. However, it is unclear to me how to interpret your software output rel…
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Hello,
I am currently using hyprcoloc to identify colocalization of ~15 different traits. Some of these traits are pQTLs, others are eQTLs.
I noticed, that I get different results depending on the n…
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### Description:
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This need a matrix with 3 chromosomes, a GFF file and a table with loci of interest.
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I have been trying to see which markers colocalize best with GABABR. I have followed the standard method of looking at colocalization by taking the Pearson correlation between the raw fluorescence ima…
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Dear Authors,
I want to do colocalization analysis using the same summary statistics file you used. The file you used is named 'microgliaQTL_multiGWAS.finemapping_merged.csv.gz,' and it is not avail…