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I am trying to create contact matrices split by sex. I think I can do this (using polymod data) by filtering the survey participants and contact matrices by sex, and creating the split matrices (i.e. …
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Hello, I am trying to extract the contact matrices from a 5000 bp resolution pairs file following the command
```
cooler cload pairs \
-c1 2 -p1 3 -c2 4 -p2 5\
$CHRSIZES:5000 \
$AUX…
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The function arguments and documentation in several places refer to directionality of contacts, with one group contacting another. However, who initiates contact is usually not recorded in contact mat…
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HELLO.
my out.JBAT.log file generated is empty.
(java -jar -Xmx32G juicer_tools.1.9.9_jcuda.0.8.jar pre out_JBAT.txt out_JBAT.hic.part
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The `matrix_plot` function uses `fields::image.plot` which seems to have been [deprecated](https://search.r-project.org/CRAN/refmans/fields/html/image.plot.html) so this should be updated.
Other co…
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The [{contactmatrix}](https://github.com/socialcontactdata/contactmatrix) R package aims to unify the underlying data structure used by packages that use contact matrices. {epiparameter} aims to do so…
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Rough plan:
- Using age-specific population, estimate proportion of the Race/Ethnicity population in each "contact class" (school, community, work, household contacts)
- Apply these weight to the co…
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New config format from Breaking Improvements
- use config writer (Shaun)
- Add race/ethnicity and contact matrices
- create SEIR (Sara)
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**Acceptance Criteria**
1. Show ISO format in date time fields in UI
- UTC >>> 2024-05-07T04:03:11+00:00
- MMT >>> 2024-05-07T10:33:11+06:30
2. These are the following items to update the dat…