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It is very likely just a cluster but being quite big and recent better to track it.
KP.3.2 >C11767T, A20511G,S:N148D (A22004G)
Query: C11767T, A20511G,A22004G
Samples: 25
Countries : Canada, Ontar…
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It seems that there is a new convergent mutation of S:R190S. It usually couples with S:S31del.
Cov-spectrum shows its growth is negative with S:S31S, but large growth advantage with S:S31-. It see…
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Query: C14235T, C16877T, C21654T
KP.3.3.3> C28657T> C16877T(Orf1b:T1137I)> G6545A(Orf1a:D2094N), C14235T, C21654T(S:S31F)
06-17~07-26 Miyagi, Japan
https://nextstrain.org/fetch/genome-test.gi.u…
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This request works fine:
[https://lapis.cov-spectrum.org/gisaid/v2/sample/alignedNucleotideSequences?accessKey={accessKey}&country=Switzerland&DateMonth=5&limit=3](https://lapis.cov-spectrum.org/gisa…
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XBB.1.5 lineage mainly found in Canada, with the rare mutation Orf6:I26V, detected in 3 other countries.
Cov-Spectrum: https://cov-spectrum.org/explore/World/AllSamples/Past3M/variants?aaMutations=…
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From branch 77 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1.7+C28849T+S:F456L,Orf1a:A3497V
Query: C28849T,T22928C,C10755T
No. of seqs: 20 (Franch 1 Germany 1 UK 17 U…
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Transferred from https://github.com/sars-cov-2-variants/lineage-proposals/issues/1953
There is another LB.1 sublineage different from LB.1.9 that got the uptrending S:K478T reversion.
In addition …
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1908
XEC has three main branches one defined by Orf1a:A599T the other defined by Orf1a:I1367L that is convergent with Kp.3.3.4
…
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From branch 106 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1253
JN.1.7+Orf3a:V97I+S:F456L
Query: T22928C, G25681A,C14931T
No. of seqs: 30 (Canada)
First: EPI_ISL_19218850, …
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Hello, i have big interests of your Mesomics project, so i just try to do similar analyses with other cancer datasets.
However i keep struggling to do mapping the feature to ternary plot like below. …