-
Good morning,
In the README is said that in the feature it will be possible to work with ONT sequencing data and that the De novo assembly strategy will be available.
I would like to know if you are…
-
Dear CAMISIM team,
I am starting to try and use CAMISIM for a bunch of projects we have, but wonder if all of them will fit. For instance, is it possible to use CAMISIM for simulating amplicon sequ…
-
@golu099 brought up [GAPPadder](https://github.com/simoncchu/GAPPadder) as a tool to potentially replace [Gap2Seq](https://github.com/rikuu/Gap2Seq) for filling gaps in seq coverage between scaffolded…
-
Hello!
I have got a de novo genome assembly from Illumina PE sequencing. This assembly has got 8.7 million scaffolds in fasta format. I splitted this fasta file to multiple fasta files. One fasta f…
-
Hi,
I came across a paper related to PepNet. I want to integrate it in my de novo sequencing pipeline, but I am wondering if it is possible to get the top N best candidate peptides for each spect…
-
GoldRush is a de novo genome assembly algorithm with linear time complexity in the number of input long sequencing reads.
Repository: https://github.com/bcgsc/goldrush
-
### Description of feature
Due to the high fragmentation of ancient DNA data, there is not much gain in using long-read DNA sequencing methods for assembling ancient DNA samples. However, many ancien…
-
Good afternoon,
I am assembling fish genomes de novo using hifi data and have run into a few issues for a few of my target species (all diploid);
first, to better understand the size and heterozyg…
-
Hi @liuqianhn,
Can you tell me if nanomod is compatible with R10 chemistries? I am interested in de novo detection of modifications in metagenomic sequencing data from R10 runs, but it seems like …
-
Hello,
I wanted to run the model in denovo mode, but I am getting this error:
File "/home/jannik/Masterthesis/de_novo_peptide_sequencing/ContraNovo/ContraNovo/ContraNovo.py", line 198, in main
…