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This would be quite a large refactoring, but it would simplify a large part of the codebase, and means that going forward we can forget about EBBs entirely.
If we didn't care about preserving histo…
edsko updated
1 month ago
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Hello everyone,
I've used your tool in different metagenomics project and now, as suggested by my supervisor in a WGA, I've used as a decontamination tool after scaffolding.
Following, I've tri…
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Decontamination should be a thing, to add some depth to the gameplay
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Hello everyone,
I'm trying to follow the pipeline to eliminate the foreign genomes in the de novo assembled genome. I have a questions regarded to search against the database by DIAMOND. I got the r…
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### Model introduction
The models are created by Tongyi Qianwen, part of Alibaba Cloud, and are a general-purpose model, but incorporate the techniques used to train CodeQwen. More information can be…
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id like to see a decontamination shower added this would be a kind of simply thing to add as well as it would open up new opportunity's for the radiation system that's other wise been mostly neglect…
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I want to test how efficient decontamination of human DNA is with:
* minikraken2
* minimap2
Needs the validation files in #4
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Hi, I have a quick question. I am wondering if it is rationale to perform empty droplet based methods such as cellbender, then further perform decontamination using scCDC after clustering?
yimwy updated
1 month ago
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**Accidently wrote over the old script that was used when the unaligned pair-end issue was found (#31). However, it is now resolved after filtering by lane etc. Please check this #29 to see the script…
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### Problem Description
We are currently decontaminating the short reads using `bbduk.sh`. Would it make sense to decontaminate the long reads as well?
### Problem Solution
I've seen certain …