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Thank you for an excellent and well-documented resource.
According to the catalogue
"Before insertion into GenPhenSQL, all variant coordinates were normalized with bcftools norm; variants that
…
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Hello,
Thank you for providing such great tools. I appreciate it. I have a few questions about the output vcf. I ran the HG002 sample with default parameters for germline call, but I noticed that t…
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Our pipeline requires that users install every variant caller at runtime, even if they don't actually use some of them.
For example, DELLY is not used by the pipeline by default, but it is still inst…
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Hello, I am a novice so any help welcome
trying from zip file
Christoss-MacBook-Pro:~ christos$ cd /Volumes/SD/svelter-master
Christoss-MacBook-Pro:svelter-master christos$ python setup.py inst…
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### Go version
go1.23.0 windows/amd64
### Output of `go env` in your module/workspace:
```shell
set GO111MODULE=
set GOARCH=amd64
set GOBIN=
set GOCACHE=C:\appData\go-build
set GOENV=C:\Users\u…
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Hi, Tanya. Can you please prepare a table that lists…
+ [x] the number of GitHub watchers, stars, and forks for each formula in Homebrew/science that has a GitHub a repo https://github.com/Linuxbre…
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When i try to import jellyfish, the terminal come up with the error.
my python version : 3.9.13
`import jellyfish`
Traceback (most recent call last):
File "c:\Users\Lenovo\Desktop\Code\Easyl…
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### Version of Singularity:
3.5.3
### Expected behavior
I am trying to run a bash script using a container within singularity
`singularity run Delly.simg Delly_script.sh `
### Actual beha…
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Hi,
I've encountered a variantconvert error when running with the `-vcf 1` option. Which looks like this:
```
python3 /usr/local/share/python3/variantconvert//variantconvert convert -i 20230526_…
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**Describe the issue**
Hi @tyamaguchi-ucla, @jmlivingstone, and @rhughwhite,
Somatic SV calling has 4 steps.
Step1: At least one tumor sample and a matched control sample are required for SV di…