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uclahs-cds
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pipeline-call-sSV
Nextflow pipeline to call somatic structural variants using DELLY and Manta
https://uclahs-cds.github.io/pipeline-call-sSV/
GNU General Public License v2.0
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Bump the pipeline-submodules group across 1 directory with 2 updates
#173
dependabot[bot]
opened
3 hours ago
0
Document parameter recommendations
#172
Faizal-Eeman
opened
3 days ago
0
Improve algorithm documentation
#171
Faizal-Eeman
opened
3 days ago
0
Use `store_object_as_json` to store parameters
#170
nwiltsie
opened
3 weeks ago
0
`Cue` addition
#169
yashpatel6
opened
1 month ago
0
Bump external/pipeline-Nextflow-module from `537da32` to `1cfa9fa` in the pipeline-submodules group
#168
dependabot[bot]
closed
3 hours ago
2
Bump the pipeline-submodules group across 1 directory with 2 updates
#167
dependabot[bot]
closed
2 months ago
1
Use `methods.setup_process_afterscript()` for process logs
#166
nwiltsie
opened
2 months ago
0
Bump the pipeline-submodules group with 2 updates
#165
dependabot[bot]
closed
2 months ago
2
Update dependabot to group common submodules
#164
nwiltsie
closed
2 months ago
0
Mask version number in config tests
#163
nwiltsie
closed
2 months ago
0
Bump external/pipeline-Nextflow-config from `bc3f67e` to `be1eaf5`
#162
dependabot[bot]
closed
2 months ago
1
Update memory allocations in M64 config
#161
tyamaguchi-ucla
closed
3 months ago
0
Update memory allocation in M64 config
#160
tyamaguchi-ucla
closed
3 months ago
0
Bump external/pipeline-Nextflow-config from `e703579` to `bc3f67e`
#159
dependabot[bot]
closed
3 months ago
2
Bump external/pipeline-Nextflow-module from `4597ebc` to `ef40c10`
#158
dependabot[bot]
closed
3 months ago
1
Bump external/pipeline-Nextflow-config from `f3448ac` to `e703579`
#157
dependabot[bot]
closed
3 months ago
1
Bump external/pipeline-Nextflow-module from `9db08f0` to `4597ebc`
#156
dependabot[bot]
closed
3 months ago
0
Bump external/pipeline-Nextflow-config from `f3448ac` to `795384d`
#155
dependabot[bot]
closed
3 months ago
1
Upgrade to latest static analysis Action
#154
nwiltsie
closed
4 months ago
0
Bump external/pipeline-Nextflow-config from `f3448ac` to `af6a606`
#153
dependabot[bot]
closed
3 months ago
1
StructuralVariantAnnotation
#152
Faizal-Eeman
opened
4 months ago
0
Standardize description in `metadata.yaml`
#151
Faizal-Eeman
closed
4 months ago
0
Update repository description to match standard
#150
nwiltsie
closed
4 months ago
0
Re-enable testing workflow after breaking changes
#149
nwiltsie
opened
5 months ago
0
Add supported Nextflow version to `README.md`
#148
Faizal-Eeman
closed
5 months ago
0
Add supported Nextfow version in README
#147
Faizal-Eeman
closed
5 months ago
0
Add PlantUML diagram
#146
Faizal-Eeman
closed
5 months ago
0
Bump external/pipeline-Nextflow-config from `3ec7186` to `f3448ac`
#145
dependabot[bot]
closed
5 months ago
1
DELLY Somatic CNV calling
#144
Faizal-Eeman
opened
5 months ago
1
Release `6.1.0`
#143
yashpatel6
closed
5 months ago
0
Backfill documentation for existing releases
#142
nwiltsie
closed
6 months ago
1
Add standard pipeline workflows
#141
nwiltsie
closed
6 months ago
0
Function updates
#140
yashpatel6
closed
6 months ago
0
Missing call to methods.setup_docker_cpus()
#139
nwiltsie
closed
6 months ago
0
output `FILTER==PASS` variants from Manta output
#138
Faizal-Eeman
opened
6 months ago
0
Add PlantUML flow diagram
#137
nwiltsie
closed
5 months ago
0
Add CODEOWNERS file
#136
nwiltsie
closed
6 months ago
0
Incorporate Action to automatically render included PlantUML images
#135
nwiltsie
closed
6 months ago
0
Resolve shadowed `methods.check_limits`
#134
nwiltsie
closed
6 months ago
0
Resolve shadowed `methods.set_resources_allocation`
#133
nwiltsie
closed
6 months ago
0
Release `v6.0.0`
#132
Faizal-Eeman
closed
6 months ago
2
Bump external/pipeline-Nextflow-config from `da8e990` to `3ec7186`
#131
dependabot[bot]
closed
6 months ago
2
Release `6.0.0`
#130
Faizal-Eeman
closed
6 months ago
0
Release `6.0.0-rc.2`
#129
Faizal-Eeman
closed
7 months ago
1
Release `6.0.0-rc.2`
#128
Faizal-Eeman
closed
7 months ago
0
Bump external/pipeline-Nextflow-config from `7e10f2c` to `da8e990`
#127
dependabot[bot]
closed
7 months ago
2
Add NFtest
#126
Faizal-Eeman
closed
7 months ago
0
Add NFtest
#125
Faizal-Eeman
closed
7 months ago
0
Update DELLY `v1.2.6`
#124
Faizal-Eeman
closed
7 months ago
0
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