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[SamPy](https://www.preprints.org/manuscript/202211.0556/v2) is an agent-based modeling (ABM) simulation toolkit for infectious disease epidemiology. There is some interest from @tpoisot @Beasley015 (…
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Problem Description
The goal is to develop a robust model for classifying various eye diseases using Recurrent Neural Networks (RNN). Early and accurate detection of eye diseases is crucial for eff…
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@stuppie, @mbrush, @cmungall to coordinate how diseases/indications are structured in wikidata
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Raising some initial questions and proposals for Dipper modeling of 'predictive' associations between variants and treatment response, as relevant to ingest of cancer variant sources described in Tra…
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(formerly part of https://github.com/Infectious-Disease-Modeling-Hubs/hubEvals/issues/12)
Create an internal data transformation function in hubEvals that will transform sample model-output data in…
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# Disease modeling for public health - Kalman filter in R: FKF package
[https://www.jonghoonk.com/posts/vaccine_effectiveness/](https://www.jonghoonk.com/posts/vaccine_effectiveness/)
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Sierra was a bit concerned at today's data modeling call to see that the KG2 API returns a **uniprot** 'causes' edge for the query NCBIGene:351 (APP) -- related_to --> HP:0100543 (Cognitive impairment…
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More of a question first, which may lead to a proposal later.
Is there a consensus on how to represent the concept of an age at session in the BIDS metadata hierarchy?
The context concerns longi…
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This function does not yet exist, but has been proposed here: https://github.com/Infectious-Disease-Modeling-Hubs/hubUtils/issues/149
Once that has been written, we can use that in place of code [h…
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The test fails with the following:
```
_________________ TestMarian_MT_EN.test_batch_generation_mt_en _________________
[gw0] linux -- Python 3.6.9 /usr/local/bin/python
self =
@slow
…