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For users' convenience, we provide data reader functions based on [3DGS](https://github.com/graphdeco-inria/gaussian-splatting) to load data from SMC files directly, rather than to preprocess our data…
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I'd like to consult about a camera pose conversion issue while conducting experiments on the dna dataset. I've rewritten the dna dataset into colmap format for training, but the results are poor. Here…
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Dear Authors,
I have read your paper with great interest and I am particularly intrigued by the Fréchet Reconstruction Distance (FReD) metric introduced for assessing the quality of generated DNA s…
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(modelenv) lsl@asus:~$ bonito train --epochs 1 --lr 5e-4 --pretrained dna_r10.4.1_e8.2_400bps_hac@v5.0.0 --directory /data/training/ctc-data /data/training/fine-tuned-model
[loading model]
[using pr…
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I am currently working on training a model to detect DNA modifications in **all contexts (all positions)** using Remora. During the data preparation step, I encountered an issue where the `--motif` ar…
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Hi @aquaskyline,
Thanks for developing such a great tool! I am currently testing your variant caller with ONT data originated from different organisms, and it could nicely recognize SNPs but I am h…
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I want to know what is the training and testing dataset for ipdSummry model to detect DNA methylation.
In this paper "Direct detection of DNA methylation during single-molecule, real-time sequencin…
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Hi,
i'm wondering if it is neccessary to reverse all input DNA sequence to positive strand when using sei. Biologically speaking both strand should have the same peak but i'm not sure whether this is…
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**Use-cases/examples of this new feature**
Model training on data from DNA-encoded library screening.
**Desired solution/workflow**
Implement the custom loss described in this paper: https://pubs…
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My commdand-lines:
```
# NanoSim v3.1.0
singularity run -B /nfs/ nanosim_v3.1.0.sif read_analysis.py genome \
-i all.pass.filt.fastq \
-rg 741_wzi_types.fa \
-o training \
--chi…