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bcgsc
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NanoSim
Nanopore sequence read simulator
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Reading the simulated_aligned_reads
#209
Evandio-Martin
opened
3 weeks ago
3
Failure in using Nanosim for transcriptome (ValueError: file does not contain alignment data)
#208
aerusakovich
opened
1 month ago
0
Questions about the usage and processing of the expression profile
#207
joyceFunk123
opened
2 months ago
1
Can't install Nanosim
#206
aerusakovich
closed
2 months ago
2
Coverage breadth following metagenome characterization
#205
ezherman
closed
2 months ago
2
How to find reference genome for pre-trained models
#204
Evandio-Martin
closed
2 months ago
2
Installation error
#203
mfbeuq
closed
4 months ago
4
IndexError: list index out of range
#202
weishwu
opened
4 months ago
4
Support for Dorado?
#201
weishwu
closed
3 months ago
2
Options / suggestions for how to simulate nCats data?
#200
tfenne
opened
7 months ago
1
Fix infinite loop for very short references
#199
kmnip
closed
6 months ago
1
Models for newer versions of Guppy with sup basecalls
#198
hasindu2008
opened
8 months ago
3
Rbk mode
#197
GeorgetteTanner
opened
9 months ago
0
Rbk mode
#196
GeorgetteTanner
closed
9 months ago
0
NanoSim for tuning Minimap2 parameters?
#195
ammaraziz
closed
1 week ago
2
simulator.py genome FileNotFoundError: [Errno 2] No such file or directory: 'training_model_profile'
#194
MAXINELSX
opened
10 months ago
1
Stuck at simulation stage
#193
kainth-amoldeep
opened
1 year ago
4
Update readme and help info
#192
kmnip
closed
9 months ago
0
Please specify the training reads and its reference genome!
#191
kainth-amoldeep
closed
1 year ago
3
ValueError: Found array with 0 sample(s) (shape=(0, 1)) while a minimum of 1 is required.
#190
Dr-bioinfo
opened
1 year ago
6
Potential bug-fixes for infinite loops in metagenome mode
#189
kmnip
closed
1 year ago
0
Option to specify desired read coverage or sequencing depth
#188
HLHsieh
opened
1 year ago
2
Models for R10.3 or R10.4 flow cell
#187
zhenLiuXplr
opened
1 year ago
0
Transcriptome mode error rate tsv explanation
#186
kosmasgal
closed
1 year ago
2
Infinite loop in function extract_reads in metagenome mode when length equals max length
#185
danpal96
opened
1 year ago
2
Nanosim hangs in the middle
#184
aastha-batta
opened
1 year ago
18
file has no sequences defined (mode='r') - is it SAM/BAM format? Consider opening with check_sq=False
#183
jackchen129
closed
1 year ago
1
mis.hist missing when running characterization stage
#182
lhnguye4
closed
1 year ago
0
Invalid fastq format
#181
xinehc
closed
1 year ago
4
Can NanoSim be applied to simulate single cell Nanopore reads
#180
yuntianf
opened
1 year ago
1
hangs at start of simulation
#179
omarkr8
opened
1 year ago
5
Reads come mostly from one chromosome only
#178
dariober
opened
1 year ago
1
Relax package requirements
#177
kmnip
closed
1 year ago
1
Simulating exact number of reads for each input -- transcriptome mode
#176
kosmasgal
closed
1 year ago
2
Abnormal error distribution in reads
#175
zhiliangfu
closed
1 year ago
3
Could not retrieve index file for alignments
#174
kosmasgal
closed
1 year ago
2
Unexpected phred quality scores with perfect reads
#173
lcoombe
opened
1 year ago
0
Project dependencies may have API risk issues
#172
PyDeps
opened
1 year ago
0
Read analysis -- sam_read Parse error.
#171
kosmasgal
closed
1 year ago
2
The meaning of --number in simulator.py
#170
yanhui09
opened
1 year ago
12
Update README.md
#169
xinehc
closed
1 year ago
1
reads headers empty in fasta file
#168
jlipovac
opened
2 years ago
3
fix read headers in metagenome simulation
#167
LokiLuciferase
closed
2 years ago
2
Index out of range errors
#166
RagnarGrootKoerkamp
opened
2 years ago
2
No module named `sklearn.neighbours.kde`
#165
RagnarGrootKoerkamp
opened
2 years ago
9
Multithreading bug when using log-normal sampling
#164
2tony2
opened
2 years ago
3
Output is not reproducible
#163
baraaorabi
opened
2 years ago
1
NanoSim installation failure
#162
cjwoodruff50
opened
2 years ago
6
error creating from requirements.txt
#161
EmersonH2
closed
2 years ago
2
min_len and max_len options.
#160
XavierGrand
opened
2 years ago
2
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