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bcgsc
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NanoSim
Nanopore sequence read simulator
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Update dependent package requirements
#159
kmnip
closed
2 years ago
1
Optimize transcriptome simulation
#158
kmnip
closed
2 years ago
4
solve reported issue #155 - fixed read lengths
#157
SaberHQ
closed
2 years ago
0
Reads simulation stuck in an infinite loop or something...
#156
XavierGrand
closed
2 years ago
14
Issue of fixed transcriptome read length generated by Nanosim for single thread
#155
Tidesun
closed
2 years ago
2
simulate ONT full length transcriptome reads
#154
moold
closed
2 years ago
2
typo fix
#153
aafshinfard
closed
2 years ago
0
Fix error profile read IDs
#152
kmnip
closed
2 years ago
1
Non-unique Seq_name IDs in aligned_error_profile
#151
lauradunphy
closed
2 years ago
4
Bugfixes and code optimization
#150
kmnip
closed
2 years ago
0
calculate head/tail lengths from the reference genome alignment
#138
SaberHQ
closed
2 years ago
3
No such file or directory: 'human_strandness_rate'
#137
mksingh2104
closed
2 years ago
2
Incorrect head/tail length for transcriptome reads
#136
kmnip
closed
2 years ago
3
`requirements.txt` is incomplete
#135
kmnip
closed
2 years ago
0
Are the parameters of the pre-trained models available?
#134
dpellow
closed
2 years ago
2
Conda install of v 3.0.2 actually installs v 3.0.0
#133
james-vincent
closed
2 years ago
3
Breaking changes in format output from 3.0.0-beta
#132
eboileau
closed
2 years ago
1
Issue with sklearn.neighbors.kde
#131
Michal-Babins
closed
2 years ago
7
Could not retrieve index file for primary.bam
#130
eboileau
closed
2 years ago
20
Bug in besthit_to_histogram.py
#129
austin-abbvie
closed
2 years ago
9
Simulated sequence lengths
#128
AlphaSquad
closed
2 years ago
2
bug fix for issue #124
#127
kmnip
closed
3 years ago
2
ValueError: operands could not be broadcast together with shapes
#126
865699871
closed
2 years ago
7
Simulator execution error: "ImportError: No module named request"
#125
ChristosMatzoros
closed
2 years ago
2
Error occured during transcript mode running
#124
aman21392
closed
3 years ago
7
Error occur during read_analysis genome command
#123
aman21392
closed
3 years ago
1
Regarding simulate output
#122
aman21392
closed
3 years ago
4
Error occur during read_analysis.py command running
#121
aman21392
closed
3 years ago
3
Issues with simulator.py and sklearn modules
#120
greenmna
closed
2 years ago
4
Sequence length and chimeric positions
#119
mhuang00
opened
3 years ago
1
metagenome mode error
#118
dhcai21
closed
3 years ago
2
Support compressed files
#117
kmnip
closed
3 years ago
2
Simulated reads from transcripts with tpm equal 0
#116
agshumate
closed
3 years ago
2
Invalid FASTQ records
#115
agshumate
closed
3 years ago
2
IndexError: list index out of range
#114
dhcai21
closed
3 years ago
0
Understanding the output of simulator.py
#113
huzuner
closed
2 years ago
10
Simulation stops and hangs
#112
molleraj
opened
3 years ago
17
Ability to change error rate
#111
DafniG
opened
3 years ago
4
a bug in the pre-trained albacore model
#110
huzuner
closed
3 years ago
2
Error: 'NoneType' object has no attribute 'encode'
#109
TrentPrall
closed
3 years ago
7
ModuleNotFoundError: No module named 'sklearn.neighbors.kde'
#108
huzuner
closed
3 years ago
2
NanoSim produces invalid fastq files
#107
jkomyno
opened
3 years ago
11
no errors in reads in 1da74ab
#106
thackl
opened
3 years ago
1
Pre-trained models selection for genome reads simulation
#105
VeronicaBS
closed
3 years ago
0
Error in read_analysis.py
#104
WeijiaSu
closed
3 years ago
2
Fix dependencies install in Python 3.6
#103
jkomyno
closed
3 years ago
2
Problems with the metagenome mode
#102
ecollette
closed
3 years ago
2
reads did not aligned to 3' end
#101
yhg926
opened
3 years ago
3
please describe the format of abundance.tsv file
#100
yhg926
closed
3 years ago
7
need more information on the Input files
#99
yhg926
closed
3 years ago
1
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