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bcgsc
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NanoSim
Nanopore sequence read simulator
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Bug: fastq sequence and quality length different
#98
myhsi
closed
3 years ago
7
keyError: 0 Simulate.py
#97
cbirbes
closed
3 years ago
4
Merge meta
#96
cheny19
closed
3 years ago
2
Error rate of cDNA model in NanoSim
#95
gy-chop
closed
3 years ago
3
bug
#94
Huanle
closed
3 years ago
4
DNA adapter in DRS
#93
Huanle
closed
3 years ago
2
memory error
#92
arunvv90
closed
3 years ago
5
Fastq bug fix
#91
theottlo
closed
3 years ago
0
Fixed README and argument documentation regarding "strand" option
#90
fairliereese
closed
4 years ago
1
Incorrect "strand" simulator documentation
#89
fairliereese
closed
4 years ago
1
Suggested HTSeq v0.12.4 compatibility changes
#88
cytham
closed
4 years ago
1
Whether NanoSim could generate Nanopore reads by simulation
#87
Jingquan-Li
opened
4 years ago
12
Whether NanoSim could generate Nanopore reads by simulation ?
#86
Jingquan-Li
closed
4 years ago
0
cannot import name 'joblib' from 'sklearn.externals'
#85
cytham
closed
4 years ago
8
Polya basequal sim update
#84
cheny19
closed
4 years ago
0
Better descriptions of input file formats
#83
fairliereese
closed
3 years ago
3
Missing file in NA12878 dRNA pre-trained model
#82
fairliereese
closed
4 years ago
2
Simulator script crashes when loading KDF pickle file
#81
jeizenga
closed
3 years ago
11
Simulate polyA tails and base qualities
#80
theottlo
closed
4 years ago
0
processing
#79
chenyonx
closed
3 years ago
6
It hard to get how to use pretrained models
#78
artsiomkaltovich
closed
4 years ago
9
missing files in pre-trained e. coli models?
#77
clb21565
closed
4 years ago
9
simulator.py taking very long to run and RAM usage above 768 GB
#76
andrese52
closed
4 years ago
6
Does NanoSim work with PacBio?
#75
cytham
closed
4 years ago
4
Dev
#74
cheny19
closed
4 years ago
0
Overflow Warning
#73
stopalopa
closed
4 years ago
1
Multiprocessing using process instead of pool
#72
theottlo
closed
4 years ago
0
How can I specify the Minimap2 location as it does not work?
#71
Kumereng
closed
4 years ago
2
Multiprocessing simulation stage
#70
theottlo
closed
4 years ago
0
Index error fix
#69
theottlo
closed
4 years ago
0
Fixed IR Bug
#68
theottlo
closed
4 years ago
0
Interpreting starting- and insertion-positions
#67
BenjaminAlbrecht84
closed
4 years ago
3
Know mean read length from training outputs
#66
sdjebali
closed
4 years ago
1
MD flag not requested
#65
baraaorabi
closed
4 years ago
2
RAM overload
#64
ScatF
closed
3 years ago
2
'dict_ref_structure' is not defined
#63
ScatF
closed
4 years ago
4
What does "WARNING! Deletion parameters may not be optimal!" mean?
#62
harisankarsadasivan
closed
4 years ago
2
sklearn not found
#61
splaisan
closed
5 years ago
1
example files absent
#60
splaisan
closed
4 years ago
2
problem with dna_type
#59
lfaino
closed
4 years ago
2
[IndexError: string index out of range] Trying to introduce errors at indices > length of read
#58
baraaorabi
closed
4 years ago
2
Division by zero and other edge case errors
#57
baraaorabi
closed
4 years ago
9
Merge NanoSim and Trans-NanoSim
#56
SaberHQ
closed
5 years ago
2
Define read length parameters
#55
Raymi1
closed
5 years ago
1
Feature request: reporting SAM file for simulated reads
#54
seryrzu
closed
4 years ago
3
Index out of range
#53
Raymi1
closed
4 years ago
6
NanoSim Simulation and reference use
#52
ghost
closed
4 years ago
4
problem ftp adress with example data
#51
bmx-mt
closed
5 years ago
3
all reads aligned bug?
#50
machand
closed
4 years ago
3
simulator.py gets stuck (training done on NGMLR bam file)
#49
sdjebali
closed
3 years ago
1
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