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bcgsc
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NanoSim
Nanopore sequence read simulator
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Index error fix
#69
theottlo
closed
4 years ago
0
Fixed IR Bug
#68
theottlo
closed
4 years ago
0
Interpreting starting- and insertion-positions
#67
BenjaminAlbrecht84
closed
4 years ago
3
Know mean read length from training outputs
#66
sdjebali
closed
4 years ago
1
MD flag not requested
#65
baraaorabi
closed
5 years ago
2
RAM overload
#64
ScatF
closed
3 years ago
2
'dict_ref_structure' is not defined
#63
ScatF
closed
5 years ago
4
What does "WARNING! Deletion parameters may not be optimal!" mean?
#62
harisankarsadasivan
closed
5 years ago
2
sklearn not found
#61
splaisan
closed
5 years ago
1
example files absent
#60
splaisan
closed
4 years ago
2
problem with dna_type
#59
lfaino
closed
4 years ago
2
[IndexError: string index out of range] Trying to introduce errors at indices > length of read
#58
baraaorabi
closed
5 years ago
2
Division by zero and other edge case errors
#57
baraaorabi
closed
5 years ago
9
Merge NanoSim and Trans-NanoSim
#56
SaberHQ
closed
5 years ago
2
Define read length parameters
#55
Raymi1
closed
5 years ago
1
Feature request: reporting SAM file for simulated reads
#54
seryrzu
closed
5 years ago
3
Index out of range
#53
Raymi1
closed
5 years ago
6
NanoSim Simulation and reference use
#52
ghost
closed
5 years ago
4
problem ftp adress with example data
#51
bmx-mt
closed
5 years ago
3
all reads aligned bug?
#50
machand
closed
5 years ago
3
simulator.py gets stuck (training done on NGMLR bam file)
#49
sdjebali
closed
3 years ago
1
Error encountered in the KernelDensity function
#48
lfaller-zymergen
closed
5 years ago
2
AttributeError: 'HTSeq._HTSeq.SAM_Alignment' object has no attribute 'supplementary
#47
ghost
closed
5 years ago
0
model fitting
#46
jannaf
closed
5 years ago
3
simulator.py: UnicodeDecodeError
#45
wdecoster
closed
5 years ago
1
Make easy installable package using pip or bioconda
#44
wdecoster
closed
4 years ago
5
1D simulation reads
#43
zhangjuncsu
closed
5 years ago
1
indexerror: string index out of range
#42
harisankarsadasivan
closed
5 years ago
4
Is it possible to train the error model using a human DNA read and then simulate bacetrial genomic reads?
#41
harisankar991
closed
5 years ago
2
Covering the entire genome
#40
harisankar991
closed
5 years ago
1
Change read length distribution simulated reads
#39
FiniDG
closed
5 years ago
21
Will NanoSim adapt to revisions in nanopore chemistry?
#38
harisankar991
closed
5 years ago
1
Requirement of latest nanopore MinION reads
#37
harisankar991
closed
5 years ago
1
Identifying if bacteria is circular or linear
#36
harisankar991
closed
5 years ago
1
Unavailability of long Read MinION template
#35
harisankarsadasivan
closed
5 years ago
3
.log file for read_analysis.py? (Killed error)
#34
FiniDG
closed
5 years ago
5
Excuse me. You program can take consider the coverage information?
#33
xiangni128182
closed
5 years ago
3
power overflow
#32
std-libchen
closed
5 years ago
1
Read length distribution unexpected peaks
#31
GeorgiaBreckell
closed
5 years ago
9
Read Simulation: reference length limitation?
#30
ampodu
closed
6 years ago
4
"Index out of range" Error in read_analysis.py
#29
zhouanbo
closed
6 years ago
6
Minimap2 vs Last running time
#28
npavlovikj
closed
6 years ago
5
NanoSim v2.0
#27
SaberHQ
closed
6 years ago
0
using nanosim to generate fastq files?
#26
nick-youngblut
closed
4 years ago
2
not python>=2.6 compatible
#25
nick-youngblut
closed
6 years ago
3
Enable user-specified seed for PRNG
#24
abremges
closed
6 years ago
1
What will NanoSim do when it encounters NNNN region?
#23
cytham
closed
6 years ago
1
Calculate length of simulated reads
#22
npavlovikj
closed
6 years ago
2
nanopore data
#21
rojinsafavi
closed
6 years ago
1
Using "sam" alignments with "read_analysis.py"
#20
npavlovikj
closed
6 years ago
1
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