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Driver Analysis is a subworkflow that does:
- [ ] Global selection analysis (`dndsCV`)
- [ ] Identification of genes driving positive/negative selection (`dndsCV`)
- [ ] Identification of mutatio…
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I keep throwing the same error every time I try to plot the drivers vs signatures plot:
> matprob sig.cols for(i in 1:nrow(matprob)){
+ g
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Take them from intogen_cancer_drivers-2014.12.zip
https://www.intogen.org
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When the pawn is in Orgasmic Mytosis critical and the duplication should trigger, I got an error and hediff Orgasmic Mytosis is removed.
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Exception in SetupToils for pawn Sally driver=JobDriver…
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Fix error probability to 0.05.
Fix the number of patients to 500.
For driver pathway length {3, 4, 5, 6, 7, 8, 9},
100 genes: 70 passengers and 30 drivers.
30 driver genes are randomly s…
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I have a WGS cohort with 36 patients. When I run mutsig2cv with hg38 genome, I get only 5 genes with q
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Example driver: https://github.com/geneontology/go-ontology/issues/20250
I'd like to compare two gene sets
- all genes directly annotated to T1
- all genes directly annotated to T2
Ideally…
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Hello,
I am using the 2020+ tool to identify the potential candidate driver gene. I can download the required files, such as `snvboxGenes.bed` or `scores.tar.gz`, but I am not able to get the exact…
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This error occurs when Licentia Labs is not present. Activating Licentia Labs ensures normal operation without any errors
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Exception in JobDriver tick for pawn ABCDE driver=JobDriver_Processing…
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Hello,
I ran this data set on filtered output from Mutect2 (tumor vs normal, single patient with PoN of 4 samples). I got the mutation list by querying the vcf file from bcftools so I get the colum…