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## Part 1: Bash Script for Bedtools Commands (2.5 pts)
Your script correctly implements the necessary `bedtools` commands for sorting, merging, and subtracting the feature files. The steps for creati…
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I am attempting to replicate the results from ShinyGo, but for a specific gene set pathway. I am interested in mmu05012, parkinsons disease, and I have 266 genes correlated with it. I want to check wh…
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In the preliminary version of the practical 1, I try to cover following topics:
- [ ] Introduction to Imaging-Based Spatial Transcriptomics (Xenium Platform)
- Overview of Xenium technology and it…
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**Suggestions and plans**
follow-ups to #119
- Replace pseudo-replicate-based workflow for pseudobulking to sample-based workflow
- Use a more informative contrast for between-cell type gene set e…
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Pending the benchmarking study on PFOCR as a resource for enrichment analysis, we will optimize a procedure to calculating score as part of a BTE query, implmenting an API (or Python lib) to perform t…
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In GitLab by @kelsey.chetnik on Jun 15, 2020, 12:23
Extend the functionality of mt_stats_pathway_enrichment.R and mt_stats_pathway_enrichment_with_differential_analysis.R. Talk to Parviz to check wha…
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# Enrichment analysis
Hi, cool initiative! This will definitely be helpful for the community and for teaching in the university.
I'm Pau, a PhD student from [saezlab](https://github.com/saezlab/…
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Adding Enrichmap function for gene enrichment visualization
Enrichment map organizes enriched terms into a network with edges connecting overlapping gene sets. In this way, mutually overlapping gene …
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Dear WebGestaltR authors,
I noticed that when I run the same analysis with the online app and the R package, I don't get the same "job summary" output, for the "entrez ID to functional categories"…
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## Short description of the problem
Dear Devs,
As far as I understand the 'associated groups' are decided before the enrichment analysis by the function `get_enriched_groups`. This function calc…