krumsieklab maplet issues

krumsieklab / maplet

R statistical toolbox for metabolomics

GNU General Public License v3.0

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issues

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Stop objects loading in the global environment

#171 KelseyChetnik opened 10 months ago
0
Fix mt_pre_trans_scale incorporating colData incorrectly

#170 austinv11 closed 1 year ago
1
function to check features "ok"

#169 KelseyChetnik opened 2 years ago
0
ggadd - pass multiple aesthetics

#168 KelseyChetnik opened 2 years ago
0
Have all stats funs accept formulas

#167 KelseyChetnik opened 2 years ago
0
Dynamic Rows and Columns for Boxplot / Scatter Function

#166 KelseyChetnik opened 2 years ago
1
Make mt_write_se_xls output compatible with mt_load_xls and mt_anno_xls

#165 KelseyChetnik opened 2 years ago
0
Eliminate need for columns with lists as values (e.g. pathway functions)

#164 KelseyChetnik opened 3 years ago
0
optimize heatmap annotation colors

#163 KelseyChetnik opened 3 years ago
0
Make any SE object maplet compatible

#162 KelseyChetnik closed 3 years ago
4
make mtm_logging a starting mt_ function

#161 KelseyChetnik closed 2 years ago
1
Remove parseInfo field from loading functions

#160 KelseyChetnik closed 3 years ago
1
Biocrates non-UTF-8 logtxt problem

#159 KelseyChetnik closed 1 year ago
2
Expanding mts functionality

#158 KelseyChetnik opened 3 years ago
1
mt_plots_pca - delayed error

#157 KelseyChetnik closed 2 years ago
1
plotly currently doesn't work properly

#156 KelseyChetnik closed 3 years ago
1
interactive functionality for all plot types

#155 KelseyChetnik opened 3 years ago
2
prevent use of ggplotly for heatmaps

#154 KelseyChetnik closed 3 years ago
1
add better error message for mtm_rest_get_entries "out of bounds" error

#153 KelseyChetnik closed 3 years ago
1
Implement speedglm package

#152 KelseyChetnik opened 3 years ago
0
remove pre-calculated pathview databases

#151 KelseyChetnik opened 3 years ago
0
add an "end_at" argument to html generator

#150 KelseyChetnik opened 3 years ago
0
mt_plots_pca: delayed label_col parameter error

#149 KelseyChetnik opened 3 years ago
0
mt_plots_net should throw better error when all edges are filtered out

#148 KelseyChetnik opened 3 years ago
1
logrank test for left-censored data

#147 KelseyChetnik opened 3 years ago
0
Fix plot labels in volcano plot legend

#146 KelseyChetnik opened 3 years ago
2
Plotting function for network module identification functions

#145 KelseyChetnik opened 3 years ago
0
Missingness plot per phenotypic group

#144 KelseyChetnik opened 3 years ago
0
RMD creation: adapt plot size to specific plot (eg. equalizer needs more space)

#143 KelseyChetnik opened 3 years ago
0
RMD creation: make headers and messages more intuitive

#142 KelseyChetnik opened 3 years ago
1
Extend equalizer plotting function for overlapping pathway annotations

#141 KelseyChetnik closed 3 years ago
1
Adapt pathview function to make results more visually understandable

#140 KelseyChetnik closed 3 years ago
1
Tagging Function

#139 KelseyChetnik closed 2 years ago
1
Create ggplot fixer function

#138 KelseyChetnik closed 3 years ago
2
Update code example in function description

#137 KelseyChetnik opened 3 years ago
0
Create example-based mti_ documentation

#136 KelseyChetnik opened 3 years ago
0
Validate external, custom SummarizedExperiment objects

#135 KelseyChetnik opened 3 years ago
1
Bug: mt_logging_statsinfo does not work on output of mt_stats_univ_missingness

#134 KelseyChetnik closed 2 years ago
1
Finish mt_plots_multstats_upset

#133 KelseyChetnik opened 3 years ago
0
mt_plots_statsbarplot has to throw more meaningful errors if rowData columns missing

#132 KelseyChetnik closed 3 years ago
1
mt_files_anno_xls should throw error if there are any columns in the annotations that already exist in the rowdata/coldata

#131 KelseyChetnik closed 3 years ago
1
MT-specific SummarizedExperiment summary() function

#130 KelseyChetnik opened 3 years ago
0
lm and addFC functions not robust

#129 KelseyChetnik opened 3 years ago
1
make mti_fix_ggplot_env optional

#128 KelseyChetnik closed 3 years ago
1
Fix interactive plots when generating html

#127 KelseyChetnik closed 3 years ago
1
Add new functionality to compute correlation among a user defined list of sample annotations

#126 KelseyChetnik opened 3 years ago
0
Anchor based normalization

#125 KelseyChetnik opened 3 years ago
0
Check for log flags

#124 KelseyChetnik opened 3 years ago
2
Extend mt_stats_univ_tau to work with any correlation method

#123 KelseyChetnik closed 3 years ago
2
Make lm function output correlation values

#122 KelseyChetnik closed 3 years ago
1