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krumsieklab
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maplet
R statistical toolbox for metabolomics
GNU General Public License v3.0
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mt_stats_univ_lm linear model performance issue
#121
KelseyChetnik
opened
3 years ago
2
Dynamic height of equalizer plot
#120
KelseyChetnik
opened
3 years ago
0
Boxplot performance issues
#119
KelseyChetnik
closed
3 years ago
6
mt_plots_net should not require coloring parameter
#118
KelseyChetnik
closed
3 years ago
2
Bug: mt_plots_net doesn't work in package
#117
KelseyChetnik
closed
3 years ago
4
Pathway stats function does not seem to follow conventions
#116
KelseyChetnik
opened
3 years ago
0
Combine mt_reporting_html and mt_reporting_generateMD into one function
#115
KelseyChetnik
opened
3 years ago
0
significance statistics
#114
KelseyChetnik
closed
3 years ago
2
geom_smooth outputs unsupressed warning text (to stderr) about formula
#113
KelseyChetnik
opened
3 years ago
2
helper functions for multiple outcomes (used e.g. in ROS/MAP and COVID)
#112
KelseyChetnik
opened
3 years ago
1
BUG: multi-core functionality of LM
#111
KelseyChetnik
opened
3 years ago
0
Improve pathview
#110
KelseyChetnik
opened
3 years ago
0
Refine/Create script for knn imputation of large datasets (>2000 samples)
#109
KelseyChetnik
opened
3 years ago
0
Convert sample filtering function into central mti function
#108
KelseyChetnik
opened
3 years ago
0
Revisit outlier function
#107
KelseyChetnik
opened
3 years ago
0
Combine mt_plots_boxplot.R and mt_plots_scatter.R into one common code
#106
KelseyChetnik
closed
3 years ago
2
RMD: function to output list of metabolites that have been filteredo ut
#105
KelseyChetnik
closed
3 years ago
2
Implement igraph network clustering algorithms
#104
KelseyChetnik
opened
3 years ago
0
Mean vs. sample plot
#103
KelseyChetnik
closed
3 years ago
2
PredRank (extension of SurvRank)
#102
KelseyChetnik
closed
3 years ago
2
Plot function for outlier detection stats function
#101
KelseyChetnik
opened
3 years ago
0
RMD creation: add function to include custom text
#100
KelseyChetnik
opened
3 years ago
0
RMD creation: when a network is present, plot visnetwork instead of ggnet object
#99
KelseyChetnik
opened
3 years ago
1
Plotting function for left censoring results
#98
KelseyChetnik
opened
3 years ago
1
Get rid of 'metabolite' everywhere
#97
KelseyChetnik
closed
3 years ago
1
Transform dataset into PCs (without pathways)
#96
KelseyChetnik
closed
3 years ago
1
Network overlap functions, reference comparison, cut-off determination
#95
KelseyChetnik
opened
3 years ago
1
Key Pathway Miner functionality (i.e. ORA type of Modentify)
#94
KelseyChetnik
opened
3 years ago
0
Pathifier algorithm
#93
KelseyChetnik
opened
3 years ago
0
WGCNA functionality
#92
KelseyChetnik
opened
3 years ago
0
All against all omics
#91
KelseyChetnik
opened
3 years ago
0
Ratio maker - complex version
#90
KelseyChetnik
closed
3 years ago
2
Data structure concept for network algorithms
#89
KelseyChetnik
opened
3 years ago
1
General wrapper
#88
KelseyChetnik
opened
3 years ago
1
Add proper error messages for stopifnot() sanity checks
#87
KelseyChetnik
opened
3 years ago
0
Document logging functionality properly, extend logging messages
#86
KelseyChetnik
opened
3 years ago
1
Tester functions, verifying that all methods behave correctly
#85
KelseyChetnik
opened
3 years ago
1
New version of equalizer that structures "univariate" results by pathways
#84
KelseyChetnik
closed
3 years ago
2
Accessor functions
#83
KelseyChetnik
opened
3 years ago
1
add functionality to transform metabolites >x% missingness into binary variables (present/absent)
#82
KelseyChetnik
opened
3 years ago
0
Modentify
#81
KelseyChetnik
opened
3 years ago
1
Minimum value imputation
#80
KelseyChetnik
closed
3 years ago
7
Quantile normalization
#79
KelseyChetnik
opened
3 years ago
0
implement limma
#78
KelseyChetnik
opened
3 years ago
3
Missingness filtering by batch
#77
KelseyChetnik
opened
3 years ago
0
Merge Two SEs
#76
KelseyChetnik
closed
3 years ago
3
data heatmap on subset of metabolites (e.g. based on statistical result filtering)
#75
KelseyChetnik
opened
3 years ago
2
p-value brackets on boxplots and barplots
#74
KelseyChetnik
opened
3 years ago
1
Tests for normality
#73
KelseyChetnik
opened
3 years ago
0
sparse PCA for feature reduction
#72
KelseyChetnik
opened
3 years ago
0
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