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More downstream of the genome use cases. Will integrate this with additional knowledge such as monarch and genebank.
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Request for collaboration
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I encountered the following error when running genovi with a genebank file downloaded from NCBI (https://www.ncbi.nlm.nih.gov/nuccore/AL513382.1). I downloaded the files manually via `send to > comple…
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Hi @tseemann I observed an inconsistency when annotating a genome with prokka.
First I downloaded the M. ulcerans Agy99 genome ( fasta and genebank format).
I performed annotation on the fasta…
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When searching for list of germplasms, we should know if that plant material can be ordered in the genebank.
the easy approach would be to add an available field, but maybe not enough:
"germplas…
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Hello everyone,
I am trying to run pan-genome analysis on 32 AOA species using the full genebanks I obtained from the NCBI and this code
./panX.py -fn data/genebanks -sl pratice -t 6
Howeve…
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Funannotate pipeline is awesome. I have two queries.
1) how to incorporate results of Barrnap (rRNA prediction) in final genebank and other annotated files.
2) Add tool to generate circos plot of…
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Genebank and GHU users' needs satisfied and enabled by the provision of germplasm from collections
Innovations for more effective and efficient conservation and exchange of germplasm norms adopted…
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Many countries have 1 or more germplasm/genebank repositories. At least some of them give their accessions unique catalog numbers, for example, those from the USDA's Germplasm Resource Information Net…
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For instance, the sequence with NCBI ID `FO905036` has `N` from base 87,615, with a feature marking the subsequence as a "gap"